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[188853_at] Glutaredoxin

Description R07E5.4 /REP_DB=WormBase Gene ID /WP=CE01046 /TR=Q21830 /GB=CAA83624.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Glutaredoxin
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 81      4grp_high_8_8 > 54      6grp_highest_nonorm > 45      6grp_total > 82      4grp_total > 57      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1929
1 2 3 4 range
A 309.3
(-2.3)
P 		1581.5
(1.8)
P 		1955.4
(3)
P 		81.9
(-3)
A 		1874
B 301.3
(-2.1)
P 		1639.6
(3)
P 		1635.3
(3)
P 		64.3
(-3)
P 		1575
C 319.6
(-2.2)
P 		1755.5
(2.3)
P 		1989.6
(3)
P 		60.6
(-3)
P 		1929
avr 310.1
(-2.2) 		1658.9
(2.3) 		1860.1
(3) 		68.9
(-3) 		1791

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2944
1 2 3 4 5 6 range
A 1189.9
(-1.9)
P 		1673.2
(-0.8)
P 		2144.7
(0.3)
P 		3245.3
(2.8)
P 		3346.1
(3)
P 		723
(-3)
P 		2623
B 1161.6
(-2.3)
P 		1786
(-1)
P 		2000.5
(-0.6)
P 		3255.9
(2.1)
P 		3666.9
(3)
P 		856
(-3)
P 		2811
C 978.4
(-2.7)
P 		1687.3
(-1.2)
P 		2075.1
(-0.4)
P 		3656.8
(3)
P 		3073.3
(1.8)
P 		845.9
(-3)
P 		2811
avr 1110
(-2.3) 		1715.5
(-0.9) 		2073.4
(-0.1) 		3386
(3) 		3362.1
(2.9) 		808.3
(-3) 		2578
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 683
1 2 3 4 range
A 112.6
(-1.8)
P 		343.3
(1)
P 		511.2
(3)
P 		12
(-3)
A 		499
B 96.1
(-1.7)
P 		404.9
(3)
P 		378.9
(2.6)
P 		13.7
(-3)
P 		391
C 105.8
(-2.2)
P 		504.7
(1.3)
P 		693.4
(3)
P 		10.2
(-3)
P 		683
avr 104.8
(-1.9) 		417.6
(1.7) 		527.8
(3) 		12
(-3) 		516

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1314
1 2 3 4 5 6 range
A 219.3
(-2.7)
P 		595.1
(0)
P 		467.1
(-0.9)
P 		823.1
(1.7)
P 		1009.7
(3)
P 		176
(-3)
P 		834
B 404.2
(-2.6)
P 		594.5
(-1.6)
P 		485.8
(-2.1)
P 		862.4
(-0.2)
P 		1489.8
(3)
P 		319.2
(-3)
P 		1171
C 362.7
(-2.3)
P 		514.8
(-1)
P 		528.2
(-0.9)
P 		735.4
(0.8)
P 		994.5
(3)
P 		283.2
(-3)
P 		711
avr 328.7
(-2.5) 		568.1
(-1) 		493.7
(-1.4) 		807
(0.6) 		1164.7
(3) 		259.5
(-3) 		905
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188853_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6369
Sequence Type Exemplar sequence
Representative Public ID R07E5.4 NCBI
Target Description R07E5.4 /REP_DB=WormBase Gene ID /WP=CE01046 /TR=Q21830 /GB=CAA83624.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Glutaredoxin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065485(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065485 NCBI Caenorhabditis elegans R07E5.4 (Glutaredoxin) mRNA, complete cds. 11/11 None
SNAP00000012845 ENSEMBL cdna:SNAP chromosome:CEL140:III:4394765:4396295:1 11/11 None
GENEFINDER00000012866 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4394765:4396295:1 11/11 None
R07E5.4 ENSEMBL cdna:known chromosome:CEL140:III:4394267:4396295:1 gene:R07E5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4394266-4396295(+) 100.0 100.0
Public Domain and Genome References
Gene Title Glutaredoxin
Ensembl R07E5.4
Entrez Gene 175568 Entrez gene
SwissProt Q21830 EMBL-EBI
WormBase CE01046 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83624 Hypothetical protein R07E5.4 [Caenorhabditis elegans] ref|NP_497886.1| R07E5.4 [Caenorhabditis elegans] 1.0E-120
blast CAA83624 Hypothetical protein R07E5.4 [Caenorhabditis elegans] ref|NP_497886.1| R07E5.4 [Caenorhabditis elegans] 1.0E-103
blast CAE71214 Hypothetical protein CBG18077 [Caenorhabditis briggsae] 1.0E-101
blast AAA27914 Hypothetical protein C02D5.2 [Caenorhabditis elegans] ref|NP_498884.1| C02D5.2 [Caenorhabditis elegans] sp|P34276|YKJ2_CAEEL Hypothetical protein C02D5.2 in chromosome III 4.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 4.7E-56
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 4.7E-56
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497886.1 1 20-42
R07E5.4 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:188853_AT
gtactactagttgcattcctgttccccgtgcttctccaggctcagcaagtcaacgtgaca
atctttaccgaatctcaatgtccgtactgcacaaagcttcttcgtgaacaaatctggcca
ttctatgtcaatcgaccgggtatcatgaacttgcagattgttccatttggaaaaggagac
tgtacatatgattacaaccgtaattttcattgtacttgcatgcacggagccactgaatgc
gacttgaatcgtctgcagaattgcgcgatttcatacttcccacgtcgtcatcttggatta
gtcacctgccttcaaggacttacaactttgagagaaggattctcaaagtgtcttagtaga
ttgtcaccaaatacacagagaaaactcatcgaatgcgccacaactcaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTACTAGTTGCATTCCTGTTCC 611 459 103 Antisense
TGCTTCTCCAGGCTCAGCAAGTCAA 537 579 131 Antisense
TACCGAATCTCAATGTCCGTACTGC 546 647 168 Antisense
TCCGTACTGCACAAAGCTTCTTCGT 518 595 183 Antisense
GGCCATTCTATGTCAATCGACCGGG 659 541 218 Antisense
ATCGACCGGGTATCATGAACTTGCA 237 35 233 Antisense
TACTTGCATGCACGGAGCCACTGAA 88 645 315 Antisense
AGAATTGCGCGATTTCATACTTCCC 535 75 359 Antisense
TTCCCACGTCGTCATCTTGGATTAG 684 625 379 Antisense
TTGGATTAGTCACCTGCCTTCAAGG 647 705 395 Antisense
TCATCGAATGCGCCACAACTCAAAC 567 621 488 Antisense
Sequence Source Affymetrix Proprietary Database