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[188850_at] 7TM receptor

Description R11D1.6 /REP_DB=WormBase Gene ID /WP=CE06311 /TR=Q21937 /GB=CAA99904.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 63      4grp_total > 10      6grp_cgc > 65      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 34.6
(-3)
A 		49.4
(-1.8)
A 		57.9
(-1.1)
A 		107.6
(3)
A 		73
B 57.9
(-3)
A 		76.4
(0.1)
A 		66.3
(-1.6)
A 		93.7
(3)
A 		36
C 48.1
(-1.3)
A 		35.3
(-2.4)
A 		28.2
(-3)
A 		98.9
(3)
A 		71
avr 46.9
(-3) 		53.7
(-2.2) 		50.8
(-2.6) 		100.1
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 10.2
(-2.7)
A 		6.5
(-3)
A 		76.7
(3)
A 		30.9
(-0.9)
A 		50.5
(0.8)
A 		20
(-1.8)
A 		70
B 22.3
(-3)
A 		40.8
(1.5)
A 		37.2
(0.7)
A 		37.7
(0.8)
A 		46.7
(3)
A 		26.4
(-2)
A 		24
C 21.2
(-1.6)
A 		51
(3)
A 		24.8
(-1)
A 		22.6
(-1.4)
A 		12
(-3)
A 		43.6
(1.9)
A 		39
avr 17.9
(-3) 		32.8
(0.2) 		46.2
(3) 		30.4
(-0.3) 		36.4
(0.9) 		30
(-0.4) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 12.6
(-0.7)
A 		10.7
(-3)
A 		15.1
(2.3)
A 		15.7
(3)
A 		5
B 18.5
(1)
A 		18.9
(1.6)
A 		15.4
(-3)
A 		20
(3)
A 		5
C 15.9
(2.3)
A 		10.2
(-2.7)
A 		9.8
(-3)
A 		16.7
(3)
A 		7
avr 15.7
(0.4) 		13.3
(-3) 		13.4
(-2.9) 		17.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.9
(-3)
A 		2.3
(-2.8)
A 		16.7
(3)
A 		7.8
(-0.6)
A 		15.2
(2.4)
A 		4.9
(-1.8)
A 		15
B 7.8
(-3)
A 		13.6
(0.1)
A 		9
(-2.4)
A 		10
(-1.8)
A 		19
(3)
A 		9.9
(-1.9)
A 		11
C 7.9
(-0.9)
A 		15.6
(3)
A 		6.3
(-1.8)
A 		4.6
(-2.6)
A 		3.9
(-3)
A 		14.6
(2.5)
A 		12
avr 5.9
(-3) 		10.5
(1.1) 		10.7
(1.2) 		7.5
(-1.6) 		12.7
(3) 		9.8
(0.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188850_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13543
Sequence Type Exemplar sequence
Representative Public ID R11D1.6 NCBI
Target Description R11D1.6 /REP_DB=WormBase Gene ID /WP=CE06311 /TR=Q21937 /GB=CAA99904.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073776(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073776 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-181) (str-181) mRNA, complete cds. 11/11 None
GENEFINDER00000040869 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12719206:12721661:-1 11/11 None
R11D1.6 ENSEMBL cdna:known chromosome:CEL140:V:12719206:12721312:-1 gene:R11D1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12719205-12721312(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-181
Ensembl R11D1.6
Entrez Gene 187807 Entrez gene
SwissProt Q21937 EMBL-EBI
WormBase CE06311 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99904 Hypothetical protein R11D1.6 [Caenorhabditis elegans] ref|NP_506177.1| Seven TM Receptor family member (str-181) [Caenorhabditis elegans] 1.0E-171
blast CAE63973 Hypothetical protein CBG08563 [Caenorhabditis briggsae] 1.0E-101
blast T25737 hypothetical protein F36H5.7 - Caenorhabditis elegans 2.0E-96
blast T25737 hypothetical protein F36H5.7 - Caenorhabditis elegans 3.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.2E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.2E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506177.1 6 10-32,45-64,98-120,133-155,201-223,236-258
R11D1.6 6 10-32,45-64,98-120,133-155,201-223,236-258
GENEFINDER00000040869 6 56-78,90-109,143-165,178-200,246-268,281-303
Sequence
Target Sequence 
>C. ELEGANS:188850_AT
ggattctatggatgctctgtcacgattctcgcaattcatttcatttacagatatggttct
ttgcataaaactcgtcgaactctttttgaaggatggaagtttatagcgtggtgtcttgtt
ccaatattctatggaattgtgtggggtctaacgatattttttattttcccagaagataaa
ggatttacggaattgataagaaaagacatttgggattattttgaattgagcattgaagat
attgtctacactggaccttattattacccagaggacaaaaatggaatacatggaattgag
ccacttgcagtttttggaatgctggttttatggtttgttattacaataattcccttgata
atgctgtacgttccatgttctattgttttcatgtgtccacttcttcaaatcaacattgga
aattgcagtgcatttattacagtatctgtggcagtctacccagctgttgacactctccca
aatatattcattatcaaaaacttcaaggaaaccactttagacttgttgtgttgtggccac
caa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTCTATGGATGCTCTGTCACGA 446 509 310 Antisense
CTCTGTCACGATTCTCGCAATTCAT 77 233 324 Antisense
GCATAAAACTCGTCGAACTCTTTTT 693 299 372 Antisense
GCGTGGTGTCTTGTTCCAATATTCT 417 291 415 Antisense
TCTACACTGGACCTTATTATTACCC 73 615 554 Antisense
TTCCCTTGATAATGCTGTACGTTCC 539 695 659 Antisense
GTACGTTCCATGTTCTATTGTTTTC 349 459 675 Antisense
ATTGTTTTCATGTGTCCACTTCTTC 297 5 691 Antisense
ACAGTATCTGTGGCAGTCTACCCAG 666 107 748 Antisense
GTTGACACTCTCCCAAATATATTCA 214 439 775 Antisense
AGACTTGTTGTGTTGTGGCCACCAA 419 71 828 Antisense
Sequence Source Affymetrix Proprietary Database