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[188848_at] 7TM receptor

Description F44G3.11 /REP_DB=WormBase Gene ID /WP=CE16042 /TR=O62240 /GB=CAB05522.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 43      4grp_total > 02      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 1.7
(-3)
A 		5
(-2.6)
A 		5.5
(-2.6)
A 		53.8
(3)
A 		52
B 4.5
(-1.7)
A 		3.3
(-3)
A 		9
(3)
A 		6.2
(0.1)
A 		6
C 5.3
(-2.8)
A 		2.4
(-3)
A 		8.8
(-2.5)
A 		73.2
(3)
P 		71
avr 3.8
(-3) 		3.6
(-3) 		7.8
(-2.4) 		44.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 18.2
(0.3)
A 		4
(-2.6)
A 		31.5
(3)
A 		1.9
(-3)
A 		11.3
(-1.1)
A 		1.9
(-3)
A 		30
B 1.4
(-3)
A 		1.5
(-2.9)
A 		1.9
(-2.6)
A 		8.9
(3)
A 		2.8
(-1.9)
A 		3.6
(-1.2)
A 		8
C 2.6
(-2.5)
A 		3.8
(-1.2)
A 		7.4
(3)
A 		2.2
(-3)
A 		2.7
(-2.4)
A 		3
(-2.1)
A 		5
avr 7.4
(-0.4) 		3.1
(-2.8) 		13.6
(3) 		4.3
(-2.2) 		5.6
(-1.4) 		2.8
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.6
(-3)
A 		1.1
(-2.6)
A 		1.4
(-2.3)
A 		7.9
(3)
A 		7
B 1.4
(-0.2)
A 		0.8
(-3)
A 		2.1
(3)
A 		1.3
(-0.7)
A 		1
C 1.8
(-2.4)
A 		0.7
(-3)
A 		3.1
(-1.8)
A 		12.3
(3)
P 		12
avr 1.3
(-2.6) 		0.9
(-3) 		2.2
(-1.8) 		7.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 3.4
(-0.3)
A 		1.4
(-2.2)
A 		6.9
(3)
A 		0.5
(-3)
A 		3.4
(-0.3)
A 		0.5
(-3)
A 		6
B 0.5
(-3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		2.3
(3)
A 		1.1
(-1)
A 		1.3
(-0.3)
A 		2
C 1
(-0.9)
A 		1.2
(-0)
A 		1.9
(3)
A 		0.5
(-3)
A 		0.9
(-1.3)
A 		1
(-0.9)
A 		1
avr 1.6
(-1.1) 		1
(-2.7) 		3.1
(3) 		1.1
(-2.5) 		1.8
(-0.5) 		0.9
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188848_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12695
Sequence Type Exemplar sequence
Representative Public ID F44G3.11 NCBI
Target Description F44G3.11 /REP_DB=WormBase Gene ID /WP=CE16042 /TR=O62240 /GB=CAB05522.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074656(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074656 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-25) (str-25) mRNA, complete cds. 11/11 A 
F44G3.11 ENSEMBL cdna:known chromosome:CEL140:V:16118264:16119480:1 gene:F44G3.11 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003427 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16118263-16119480(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-25
Ensembl F44G3.11
Entrez Gene 185759 Entrez gene
SwissProt O62240 EMBL-EBI
WormBase CE16042 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05522 Hypothetical protein F44G3.11 [Caenorhabditis elegans] ref|NP_507057.1| Seven TM Receptor family member (str-25) [Caenorhabditis elegans] 0.0
blast CAB05494 Hypothetical protein F22B8.3 [Caenorhabditis elegans] ref|NP_507050.1| F22B8.3 [Caenorhabditis elegans] 1.0E-163
blast CAE66311 Hypothetical protein CBG11561 [Caenorhabditis briggsae] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507057.1 8 21-43,53-75,101-123,138-160,197-214,224-246,273-295,305-327
F44G3.11 8 21-43,53-75,101-123,138-160,197-214,224-246,273-295,305-327
Sequence
Target Sequence 
>C. ELEGANS:188848_AT
tgatcattatttcaggtgggccttgattttgtcggctgcgctgttccacaaaaaaaattc
cagagccgaaatgcataaaagatatcgcctaaacattagcgaggttgcgtgcttttccct
ggttgcctacaactttgataatacccctagatggcgtaacatattatgcacaatttctct
attttgtattatgctcattcaatacacgataataatctattgtgcgacaattatgtatct
gaaaatggaagaaaaactgaaattattatccgtctcaataagaaatctacacagacaatt
ctataaaacattggtaatccaaatattcactccgaccatttgcctattttctcccttgat
ttttataatttttcatccacttttcaacgtggaaattgttgtgccaactggaatgctgtt
atgtgcaatcacgatatatccagcggtggatgcaattatcattatgtatgttgtaacaga
ttataggaacgctataaaaaagaacttcaaaaaagtgcagcagaagctcttgtctcaacg
aggaatgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCATTATTTCAGGTGGGCCTTG 72 559 519 Antisense
AGGTGGGCCTTGATTTTGTCGGCTG 696 53 532 Antisense
CGGCTGCGCTGTTCCACAAAAAAAA 58 243 551 Antisense
GATATCGCCTAAACATTAGCGAGGT 265 425 599 Antisense
ATTAGCGAGGTTGCGTGCTTTTCCC 391 13 613 Antisense
TATTATGCTCATTCAATACACGATA 687 661 705 Antisense
GTGCCAACTGGAATGCTGTTATGTG 618 477 919 Antisense
GTGCAATCACGATATATCCAGCGGT 193 481 941 Antisense
TCCAGCGGTGGATGCAATTATCATT 447 589 957 Antisense
GTGCAGCAGAAGCTCTTGTCTCAAC 687 479 1033 Antisense
AGCTCTTGTCTCAACGAGGAATGTC 708 79 1043 Antisense
Sequence Source Affymetrix Proprietary Database