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[188847_at] dehydrogenase

Description C55A6.8 /REP_DB=WormBase Gene ID /WP=CE09005 /TR=P90782 /GB=CAB02868.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_total > 0      4grp_total > 37      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 21.1
(3)
A 		6.7
(-1.6)
A 		2.4
(-3)
A 		6.7
(-1.6)
A 		19
B 2.8
(0.6)
A 		4
(3)
A 		2.6
(0.2)
A 		1
(-3)
A 		3
C 2.6
(-2.8)
A 		9.5
(3)
A 		2.3
(-3)
A 		4.9
(-0.8)
A 		7
avr 8.8
(3) 		6.7
(1) 		2.4
(-3) 		4.2
(-1.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 4.6
(-3)
A 		5.4
(-2.2)
A 		5.5
(-2.1)
A 		10.3
(3)
A 		5.4
(-2.2)
A 		5.9
(-1.6)
A 		6
B 1.2
(-3)
A 		24.3
(3)
A 		2.6
(-2.6)
A 		8
(-1.2)
A 		13.3
(0.1)
A 		2.1
(-2.8)
A 		23
C 3.4
(-2.4)
A 		3.8
(-1.9)
A 		3.4
(-2.4)
A 		3.1
(-2.7)
A 		8.5
(3)
A 		2.8
(-3)
A 		6
avr 3.1
(-3) 		11.2
(3) 		3.8
(-2.5) 		7.1
(-0) 		9.1
(1.4) 		3.6
(-2.6) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 7.7
(3)
A 		1.4
(-2.3)
A 		0.6
(-3)
A 		1
(-2.7)
A 		7
B 0.9
(2.3)
A 		1
(3)
A 		0.6
(-0)
A 		0.2
(-3)
A 		1
C 0.9
(-2.7)
A 		2.7
(3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		2
avr 3.2
(3) 		1.7
(-0.6) 		0.7
(-3) 		0.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.9
(0.7)
A 		1.2
(-1.7)
A 		2.6
(3)
A 		1.6
(-0.3)
A 		1.4
(-1)
A 		2
B 0.4
(-3)
A 		8.1
(3)
A 		0.6
(-2.8)
A 		2.1
(-1.7)
A 		5.4
(0.9)
A 		0.8
(-2.7)
A 		8
C 1.3
(-1.1)
A 		1.2
(-1.4)
A 		0.9
(-2.2)
A 		0.6
(-3)
A 		2.8
(3)
A 		0.9
(-2.2)
A 		2
avr 0.8
(-3) 		3.7
(3) 		0.9
(-2.8) 		1.8
(-0.9) 		3.3
(2.2) 		1
(-2.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188847_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13890
Sequence Type Exemplar sequence
Representative Public ID C55A6.8 NCBI
Target Description C55A6.8 /REP_DB=WormBase Gene ID /WP=CE09005 /TR=P90782 /GB=CAB02868.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073522(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073522 NCBI Caenorhabditis elegans C55A6.8 (dehydrogenase) mRNA, complete cds. 11/11 None
C55A6.8 ENSEMBL cdna:known chromosome:CEL140:V:11520691:11521479:-1 gene:C55A6.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029774 4/11 Cross Hyb Matching Probes None
GENEFINDER00000029785 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11520690-11521479(-) 85.32 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Ensembl C55A6.8
Entrez Gene 183837 Entrez gene
SwissProt P90782 EMBL-EBI
WormBase CE09005 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02868 Hypothetical protein C55A6.8 [Caenorhabditis elegans] ref|NP_505923.1| C55A6.8 [Caenorhabditis elegans] 4.0E-96
blast CAB02866 Hypothetical protein C55A6.6 [Caenorhabditis elegans] ref|NP_505920.1| C55A6.6 [Caenorhabditis elegans] 3.0E-36
blast CAB02864 Hypothetical protein C55A6.4 [Caenorhabditis elegans] ref|NP_505922.1| C55A6.4 [Caenorhabditis elegans] 2.0E-31
Sequence
Target Sequence 
>C. ELEGANS:188847_AT
gggggtggccgtatcattatgtggagcactgtatatttgatctcagaattatcaaggatc
cccggatccacattcttcccttgacagtgacttgtgataaatcaattgatgattttgtga
tcaaagttggagaaattgttggatcggagggtctcaatttgcttgttaataatgcaggga
taatcaccaaatacaataacaaatcggttcatgtgctagcatacagaatgagcaaggctg
cagttaatatgtttggtagaacattggcaattgatctgaaagatgatcatattttggtgg
tcaacttctgtccaggatgggttcaaactggattaggaggaccactggctacctacactg
ttgaagaatcaacaacagagttaactgccagtttctacaaactaaacaactctcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGGTGGCCGTATCATTATGTGGA 98 495 56 Antisense
GGAGCACTGTATATTTGATCTCAGA 267 521 78 Antisense
ATCTCAGAATTATCAAGGATCCCCG 493 31 95 Antisense
AAGGATCCCCGGATCCACATTCTTC 214 75 109 Antisense
CACATTCTTCCCTTGACAGTGACTT 353 195 124 Antisense
GAAATTGTTGGATCGGAGGGTCTCA 618 361 187 Antisense
TCGGTTCATGTGCTAGCATACAGAA 138 605 259 Antisense
TTTTGGTGGTCAACTTCTGTCCAGG 305 677 347 Antisense
TTAGGAGGACCACTGGCTACCTACA 705 679 388 Antisense
AACAACAGAGTTAACTGCCAGTTTC 551 135 426 Antisense
TTCTACAAACTAAACAACTCTCACA 100 691 448 Antisense
Sequence Source Affymetrix Proprietary Database