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[188845_at]

Description K07C6.15 /REP_DB=WormBase Gene ID /WP=CE17186 /TR=O44648 /GB=AAB94257.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transposase
Cluster 6grp_total > 02      4grp_total > 11      6grp_cgc > 52      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 7.7
(-3)
A 		26.7
(-2)
A 		26.3
(-2)
A 		123.9
(3)
P 		116
B 51.2
(0.6)
P 		43.7
(-1.2)
A 		36.3
(-3)
A 		61.2
(3)
A 		25
C 61.7
(-1)
A 		48
(-1.7)
A 		21.8
(-3)
A 		140.9
(3)
P 		119
avr 40.2
(-2.1) 		39.5
(-2.2) 		28.1
(-3) 		108.7
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 55
(3)
A 		52.8
(2.7)
A 		52.2
(2.6)
A 		13.9
(-3)
A 		45
(1.5)
A 		23.9
(-1.5)
A 		41
B 38.6
(0.4)
A 		53.8
(3)
M 		21.6
(-2.5)
A 		45.2
(1.5)
M 		50.5
(2.4)
P 		18.7
(-3)
A 		35
C 19.6
(-3)
A 		61.1
(3)
A 		45.9
(0.8)
A 		48.7
(1.2)
A 		27.6
(-1.8)
A 		23.8
(-2.4)
A 		42
avr 37.7
(-0.2) 		55.9
(3) 		39.9
(0.2) 		35.9
(-0.6) 		41
(0.4) 		22.1
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 2.8
(-3)
A 		5.8
(-1.8)
A 		6.9
(-1.4)
A 		18.1
(3)
P 		15
B 16.3
(3)
P 		10.8
(-1.2)
A 		8.4
(-3)
A 		13
(0.5)
A 		8
C 20.4
(1.7)
A 		13.8
(-0.7)
A 		7.6
(-3)
A 		23.8
(3)
P 		16
avr 13.2
(0.1) 		10.1
(-1.6) 		7.6
(-3) 		18.3
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.1
(-0.4)
A 		18.8
(3)
A 		11.4
(0.1)
A 		3.5
(-3)
A 		13.6
(1)
A 		5.8
(-2.1)
A 		15
B 13.4
(0.2)
A 		17.9
(2)
M 		5.2
(-3)
A 		12
(-0.3)
M 		20.5
(3)
P 		7
(-2.3)
A 		15
C 7.3
(-3)
A 		18.6
(3)
A 		11.7
(-0.7)
A 		9.8
(-1.7)
A 		8.9
(-2.2)
A 		8
(-2.6)
A 		11
avr 10.3
(-1.2) 		18.4
(3) 		9.4
(-1.7) 		8.4
(-2.2) 		14.3
(0.9) 		6.9
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188845_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14814
Sequence Type Exemplar sequence
Representative Public ID K07C6.15 NCBI
Target Description K07C6.15 /REP_DB=WormBase Gene ID /WP=CE17186 /TR=O44648 /GB=AAB94257.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K07C6.15 ENSEMBL cdna:known chromosome:CEL140:V:3933720:3934784:-1 gene:K07C6.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3933719-3934784(-) 100.0 100.0
Public Domain and Genome References
Ensembl K07C6.15
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32684 hypothetical protein K07C6.15 - Caenorhabditis elegans 1.0E-153
blast AAB94251 Serpentine receptor, class x protein 66 [Caenorhabditis elegans] ref|NP_504085.2| Serpentine Receptor, class X family member (srx-66) [Caenorhabditis elegans] 3.0E-85
blast AAB94243 Serpentine receptor, class x protein 63 [Caenorhabditis elegans] ref|NP_504090.2| Serpentine Receptor, class X family member (srx-63) [Caenorhabditis elegans] 1.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
K07C6.15 7 15-34,46-68,88-110,131-153,175-197,225-247,262-284
Sequence
Target Sequence 
>C. ELEGANS:188845_AT
catttctgcggatttgtcttacttttcttctacgaactatccgtttcaactcacttattg
gtgtctataaatcggctattggccgtctggtctcctttgtcttataataaaattttcact
ttgaaaaacacaaaaatcatggtaatttcattgtggttgtataacctggtaaacgcctat
ttgttctacattagactttgtcatttctactacaaacccgacgctcactttcttacattc
acaaatagcccgttatgcgattcagttggttggtatgtagattttctgaagaatagtgcc
attgtaacgatatttataattctggatattattacattgattaaagtgaaaagaactttc
cggcatatcaaacatcaagtgaacagtgcgaatgctctgaaaatgtcccgccgagatcgc
cgtttcttgaaacaaactgttattcaaggatccgtgtttttgattgaaattcttttttat
tttttcattccccagaattttgaagatcgatggattgtgttttttggtacctcttttgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTCTGCGGATTTGTCTTACTTT 519 215 262 Antisense
GTCTTACTTTTCTTCTACGAACTAT 95 467 277 Antisense
CGAACTATCCGTTTCAACTCACTTA 474 253 294 Antisense
AATCGGCTATTGGCCGTCTGGTCTC 314 169 331 Antisense
TCTGGTCTCCTTTGTCTTATAATAA 550 607 347 Antisense
GGTAAACGCCTATTTGTTCTACATT 130 505 429 Antisense
CGCTCACTTTCTTACATTCACAAAT 450 255 483 Antisense
AATAGCCCGTTATGCGATTCAGTTG 586 171 505 Antisense
GAACTTTCCGGCATATCAAACATCA 524 349 614 Antisense
CCGAGATCGCCGTTTCTTGAAACAA 32 265 672 Antisense
TGTGTTTTTTGGTACCTCTTTTGCG 282 555 777 Antisense
Sequence Source Affymetrix Proprietary Database