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[188844_at] Sushi domain

Description F40G12.3 /REP_DB=WormBase Gene ID /WP=CE10180 /TR=Q20253 /GB=CAB01190.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Sushi domain
Cluster 6grp_total > 09      4grp_total > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 90.6
(-3)
A 		108.4
(0.4)
A 		121.7
(3)
A 		94.8
(-2.2)
A 		31
B 52.9
(-1.5)
A 		95.5
(2.1)
A 		105.8
(3)
A 		34.8
(-3)
A 		71
C 113.1
(2.6)
A 		116.8
(3)
A 		67.2
(-3)
A 		72.4
(-2.4)
A 		50
avr 85.5
(-0.2) 		106.9
(3) 		98.2
(1.7) 		67.3
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 115.7
(3)
A 		60.5
(-0.4)
A 		76.8
(0.6)
A 		62.9
(-0.3)
A 		97.2
(1.8)
A 		19.4
(-3)
A 		96
B 21.1
(-3)
A 		45.8
(-1.5)
A 		89.3
(1.3)
M 		116.8
(3)
A 		49.9
(-1.2)
A 		58.8
(-0.6)
A 		96
C 86.1
(3)
A 		22.4
(-2.2)
A 		22.5
(-2.1)
A 		66
(1.4)
A 		12
(-3)
A 		74.5
(2.1)
A 		74
avr 74.3
(1.8) 		42.9
(-3) 		62.9
(0.1) 		81.9
(3) 		53
(-1.4) 		50.9
(-1.8) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 33
(3)
A 		23.5
(0)
A 		31.8
(2.6)
A 		13.9
(-3)
A 		19
B 16.9
(0.3)
A 		23.6
(2.7)
A 		24.5
(3)
A 		7.4
(-3)
A 		17
C 37.4
(3)
A 		33.6
(2.1)
A 		23.4
(-0.3)
A 		12.2
(-3)
A 		25
avr 29.1
(3) 		26.9
(2.3) 		26.6
(2.2) 		11.2
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 21.3
(1)
A 		21.5
(1.1)
A 		16.7
(-0.1)
A 		15.9
(-0.3)
A 		29.3
(3)
A 		4.7
(-3)
A 		25
B 7.3
(-3)
A 		15.2
(-1)
A 		21.7
(0.7)
M 		30.9
(3)
A 		20.3
(0.3)
A 		21.9
(0.7)
A 		24
C 31.9
(3)
A 		6.8
(-2.4)
A 		5.7
(-2.6)
A 		13.3
(-1)
A 		3.9
(-3)
A 		24.9
(1.5)
A 		28
avr 20.2
(3) 		14.5
(-3) 		14.7
(-2.8) 		20
(2.8) 		17.8
(0.5) 		17.2
(-0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188844_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14676
Sequence Type Exemplar sequence
Representative Public ID F40G12.3 NCBI
Target Description F40G12.3 /REP_DB=WormBase Gene ID /WP=CE10180 /TR=Q20253 /GB=CAB01190.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Sushi domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074129(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074129 NCBI Caenorhabditis elegans F40G12.3 (F40G12.3) mRNA, complete cds. 11/11 None
SNAP00000026728 ENSEMBL cdna:SNAP chromosome:CEL140:V:14266074:14269905:1 10/11 None
GENEFINDER00000026753 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14264578:14269905:1 11/11 None
F40G12.3 ENSEMBL cdna:known chromosome:CEL140:V:14264578:14269841:1 gene:F40G12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14264577-14269841(+) 100.0 100.0
Public Domain and Genome References
Gene Title Sushi domain
Ensembl F40G12.3
Entrez Gene 185563 Entrez gene
SwissProt Q20253 EMBL-EBI
WormBase CE10180 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01190 Hypothetical protein F40G12.3 [Caenorhabditis elegans] ref|NP_506530.1| F40G12.3 [Caenorhabditis elegans] 0.0
blast CAB01190 Hypothetical protein F40G12.3 [Caenorhabditis elegans] ref|NP_506530.1| F40G12.3 [Caenorhabditis elegans] 1.0E-178
blast CAB01190 Hypothetical protein F40G12.3 [Caenorhabditis elegans] ref|NP_506530.1| F40G12.3 [Caenorhabditis elegans] 1.0E-65
blast CAE57944 Hypothetical protein CBG00999 [Caenorhabditis briggsae] 1.0E-20
blast CAE57944 Hypothetical protein CBG00999 [Caenorhabditis briggsae] 2.0E-20
blast CAE60980 Hypothetical protein CBG04714 [Caenorhabditis briggsae] 5.0E-20
blast CAE57944 Hypothetical protein CBG00999 [Caenorhabditis briggsae] 3.0E-19
blast CAE60980 Hypothetical protein CBG04714 [Caenorhabditis briggsae] 3.0E-19
Sequence
Target Sequence 
>C. ELEGANS:188844_AT
ttcttctgcccgatcatctgcagtaacatctgggcttacaaataattctactgaaaagaa
aactcaaaactctaccacagcggcttcaagtgtttctacacaagttcccaacagttcggc
cagttctagtaaatcatcagaaacaactagaacttcacaaattcctgcttttggaactaa
aactgcaaacagttcagtagcagaactatcaccgaggactactgtgaatactggagaatc
ggctacaacaaaagctacttctccgacctctggaggaaatacaacaacaatatcagttca
atctgcaaatgcgacagttgcagtaaccttgactaccaatacaactactcaaaccacttc
ttcgacgacatctttcaaatcaaatttatctactccactagctcccattctctcagctgt
ctgctctcagcccaaaatagatctgaataacacagtccgcccggtctcgtcggatttgaa
atc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTCTGCCCGATCATCTGCAGTA 129 691 2076 Antisense
ACTCTACCACAGCGGCTTCAAGTGT 33 99 2144 Antisense
TACACAAGTTCCCAACAGTTCGGCC 399 641 2172 Antisense
GTTCGGCCAGTTCTAGTAAATCATC 266 441 2189 Antisense
ACAACAAAAGCTACTTCTCCGACCT 666 111 2320 Antisense
GACAGTTGCAGTAACCTTGACTACC 266 369 2388 Antisense
AATACAACTACTCAAACCACTTCTT 665 127 2413 Antisense
AAACCACTTCTTCGACGACATCTTT 632 125 2426 Antisense
CAAATTTATCTACTCCACTAGCTCC 453 193 2456 Antisense
GTCTGCTCTCAGCCCAAAATAGATC 463 471 2494 Antisense
GCCCGGTCTCGTCGGATTTGAAATC 119 285 2534 Antisense
Sequence Source Affymetrix Proprietary Database