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[188840_s_at] zinc finger

Description C28G1.4 /REP_DB=WormBase Gene ID /WP=CE04121 /TR=Q18289 /GB=AAA82353.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger
Cluster 6grp_total > 66      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 6.2
(-3)
A 		10.9
(-1.5)
A 		10.7
(-1.5)
A 		24.4
(3)
A 		18
B 15
(3)
A 		5.7
(-3)
A 		8.6
(-1.1)
A 		7.5
(-1.8)
A 		9
C 30.6
(-0.6)
A 		29.2
(-0.7)
A 		6.2
(-3)
A 		66.3
(3)
A 		60
avr 17.3
(-0.8) 		15.3
(-1.3) 		8.5
(-3) 		32.7
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 5
(-3)
A 		14.9
(-1.6)
A 		28.6
(0.3)
A 		7.5
(-2.6)
A 		5.6
(-2.9)
A 		47.3
(3)
A 		42
B 6.1
(-2.7)
A 		11.5
(-2)
A 		3.9
(-2.9)
A 		4.2
(-2.9)
A 		3.3
(-3)
A 		52.6
(3)
A 		49
C 7.4
(-2.8)
A 		10.8
(-2.5)
A 		7.3
(-2.8)
A 		84.4
(3)
A 		4.5
(-3)
A 		53.7
(0.7)
A 		80
avr 6.2
(-2.8) 		12.4
(-2) 		13.3
(-1.9) 		32
(0.5) 		4.5
(-3) 		51.2
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.3
(-3)
A 		2.4
(-2.5)
A 		2.8
(-0.7)
A 		3.6
(3)
A 		1
B 4.8
(3)
A 		1.4
(-3)
A 		2
(-1.9)
A 		1.6
(-2.6)
A 		3
C 10.1
(2.3)
A 		8.4
(1.1)
A 		2.2
(-3)
A 		11.2
(3)
A 		9
avr 5.7
(3) 		4.1
(0.2) 		2.3
(-3) 		5.5
(2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 0.9
(-3)
A 		5.3
(-0.5)
A 		6.2
(0)
A 		1.9
(-2.4)
A 		1.7
(-2.5)
A 		11.5
(3)
A 		11
B 2.1
(-2.6)
A 		3.8
(-2.1)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		1.3
(-2.9)
A 		19.6
(3)
A 		19
C 2.8
(-2.5)
A 		3.3
(-2.3)
A 		1.9
(-2.9)
A 		17
(2.6)
A 		1.5
(-3)
A 		18
(3)
A 		17
avr 1.9
(-2.8) 		4.1
(-2) 		3
(-2.4) 		6.7
(-0.9) 		1.5
(-3) 		16.4
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188840_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16098
Sequence Type Exemplar sequence
Representative Public ID C28G1.4 NCBI
Target Description C28G1.4 /REP_DB=WormBase Gene ID /WP=CE04121 /TR=Q18289 /GB=AAA82353.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077098(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077098 NCBI Caenorhabditis elegans C28G1.4 (C28G1.4) mRNA, complete cds. 11/11 None
C28G1.4 ENSEMBL cdna:known chromosome:CEL140:X:8849074:8853558:-1 gene:C28G1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8849166-8853557(-) 98.83 100.0
Public Domain and Genome References
Gene Title zinc finger
Ensembl C28G1.4
Entrez Gene 181132 Entrez gene
SwissProt Q18289 EMBL-EBI
WormBase CE04121 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82353 Hypothetical protein C28G1.4 [Caenorhabditis elegans] ref|NP_509499.1| C28G1.4 [Caenorhabditis elegans] 0.0
blast CAE45043 Hypothetical protein C09H6.1b [Caenorhabditis elegans] ref|NP_001020994.1| Suppressor of PResenilin defect family member (spr-4) [Caenorhabditis elegans] pir||T19170 hypothetical protein C09H6.1 - Caenorhabditis elegans 2.0E-46
blast CAB03868 Hypothetical protein C09H6.1a [Caenorhabditis elegans] ref|NP_001020993.1| Suppressor of PResenilin defect family member (spr-4) [Caenorhabditis elegans] sp|O17582|SPR4_CAEEL Suppressor of presenilin protein 1.0E-45
Sequence
Target Sequence 
>C. ELEGANS:188840_S_AT
gaatggcgctgctcaatcgattgaatgcggcaataaaaagaccgattaaagagcccgtcc
gtgaaaaaaataaactcccaatgagctcaaaagccaaagctgcacatcgtagcaagcagt
tcagctcaacagttgagtttcggtgcgacaaatgtgacttcaaatgcgcttcagtgaaca
actcttttgagcacagtgacaggcatggatggaataagttgtacagatgcaaattgtgcg
attattctgacgatacaaaagaagtggtgggattccacgaaaccaaacatcacaacattg
atcatttgactctggcaaacgttgttaggaatatatcttgcaatatgcgaaacggattca
ttcagccatctttgaatggaaatcaaacgccaacttcatacaaaattgctcaacgatccg
gaggggctctgataaaatgctcattttgcgaatatcacacacatgttgcaagcgaaatgg
ggcttcacatgcaaaataaccaccgaaaggagaccggagccaaagaagtaatttctgatc
tctacatgggtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGGCGCTGCTCAATCGATTGAA 550 331 2660 Antisense
AGACCGATTAAAGAGCCCGTCCGTG 469 69 2698 Antisense
GCCAAAGCTGCACATCGTAGCAAGC 395 277 2752 Antisense
GTAGCAAGCAGTTCAGCTCAACAGT 375 457 2768 Antisense
ATGTGACTTCAAATGCGCTTCAGTG 610 49 2811 Antisense
GTGGGATTCCACGAAACCAAACATC 426 487 2926 Antisense
GAAACGGATTCATTCAGCCATCTTT 106 357 3008 Antisense
AAATCAAACGCCAACTTCATACAAA 251 115 3039 Antisense
ATTGCTCAACGATCCGGAGGGGCTC 569 3 3064 Antisense
GGGGCTTCACATGCAAAATAACCAC 170 493 3138 Antisense
TAATTTCTGATCTCTACATGGGTAT 585 633 3188 Antisense
Sequence Source Affymetrix Proprietary Database