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[188836_at] NADH oxidase

Description F56D5.3 /REP_DB=WormBase Gene ID /WP=CE05969 /TR=Q20883 /GB=CAA93502.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=NADH oxidase
Cluster 6grp_high1_10_10 > 65      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_total > 56      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 544
1 2 3 4 range
A 246.5
(-2.3)
P 		231.6
(-2.6)
P 		202
(-3)
P 		602.8
(3)
P 		401
B 261.8
(-2)
P 		223.4
(-2.5)
P 		174.7
(-3)
P 		718.6
(3)
P 		544
C 253.1
(-2.1)
P 		197.7
(-3)
P 		219
(-2.7)
P 		581.4
(3)
P 		384
avr 253.8
(-2.2) 		217.6
(-2.7) 		198.6
(-3) 		634.3
(3) 		436

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 388
1 2 3 4 5 6 range
A 249.7
(-0.7)
P 		146.1
(-2.3)
P 		246.3
(-0.7)
P 		198
(-1.5)
P 		100
(-3)
P 		487.5
(3)
P 		388
B 306.5
(1.2)
P 		177.9
(-1.8)
P 		285.4
(0.7)
P 		212.2
(-1)
M 		126.1
(-3)
P 		381.9
(3)
P 		256
C 258.5
(-0.3)
P 		181.3
(-1.6)
P 		278.1
(0)
P 		261.9
(-0.2)
P 		100.3
(-3)
P 		450.4
(3)
P 		350
avr 271.6
(-0) 		168.4
(-1.9) 		269.9
(-0.1) 		224
(-0.9) 		108.8
(-3) 		439.9
(3) 		331
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 89.8
(3)
P 		50.3
(-3)
P 		52.8
(-2.6)
P 		88.2
(2.8)
P 		40
B 83.5
(-0.7)
P 		55.2
(-2.2)
P 		40.5
(-3)
P 		153.1
(3)
P 		113
C 83.8
(0.9)
P 		56.8
(-3)
P 		76.3
(-0.2)
P 		98
(3)
P 		41
avr 85.7
(0.2) 		54.1
(-3) 		56.5
(-2.8) 		113.1
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 46
(-1.9)
P 		52
(-1.5)
P 		53.6
(-1.4)
P 		50.2
(-1.6)
P 		30.2
(-3)
P 		118.7
(3)
P 		89
B 106.7
(0.7)
P 		59.2
(-2.5)
P 		69.3
(-1.8)
P 		56.2
(-2.7)
M 		51.2
(-3)
P 		142.4
(3)
P 		91
C 95.8
(0.2)
P 		55.3
(-1.8)
P 		70.8
(-1.1)
P 		52.7
(-2)
P 		32.4
(-3)
P 		150.8
(3)
P 		118
avr 82.8
(-0.3) 		55.5
(-1.9) 		64.6
(-1.4) 		53
(-2.1) 		37.9
(-3) 		137.3
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188836_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10064
Sequence Type Exemplar sequence
Representative Public ID F56D5.3 NCBI
Target Description F56D5.3 /REP_DB=WormBase Gene ID /WP=CE05969 /TR=Q20883 /GB=CAA93502.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=NADH oxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069256(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069256 NCBI Caenorhabditis elegans F56D5.3 (F56D5.3) mRNA, complete cds. 11/11 None
SNAP00000006178 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9399675:9401226:1 11/11 None
GENEFINDER00000006198 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9399675:9401226:1 11/11 None
F56D5.3 ENSEMBL cdna:known chromosome:CEL140:IV:9399675:9401226:1 gene:F56D5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9399680-9401232(+) 100.0 100.0
Public Domain and Genome References
Gene Title NADH oxidase
Ensembl F56D5.3
Entrez Gene 186382 Entrez gene
SwissProt Q20883 EMBL-EBI
WormBase CE05969 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93502 Hypothetical protein F56D5.3 [Caenorhabditis elegans] ref|NP_501657.1| F56D5.3 [Caenorhabditis elegans] 0.0
blast CAE58250 Hypothetical protein CBG01351 [Caenorhabditis briggsae] 0.0
blast CAE58237 Hypothetical protein CBG01337 [Caenorhabditis briggsae] 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR001155 EMBL-EBI NADH:flavin oxidoreductase/NADH oxidase 1.8E-38
Sequence
Target Sequence 
>C. ELEGANS:188836_AT
ggaacaactgtggaggacgctaaacaaatgtgcattgaatatgagaaacgtggatttgac
ttcgtggaactcactggaggaactgccgagaaatttgtattcgctcatcaaagagagtcg
actgtaatcagagaagcattctttgtggaatttgctgaaaccatccgtcccgttttcaag
aacactgttgtctatttaactggaggattcagaacaactggtgcaatggttgatgcaatt
acacgtaatacaactcaaggaattggattgggacgcccagcaactgcagaaccagatctt
ccaaaaaagcttcttaatggagatgtaccgtcagcagtgaaagatgaatttaatccaaat
gatatgattaaacaaattatggcaagtggatctcaaattgaacaaatggcaagaaatagt
gtggaaggtgcaggcggaaatgtaatggatcaaatcacggattatagtgatgaaaagatg
gtggctttatttactgaaaaagctgcgcaattgtttgtagatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACAACTGTGGAGGACGCTAAAC 706 525 784 Antisense
GTGGATTTGACTTCGTGGAACTCAC 499 489 833 Antisense
GGAACTCACTGGAGGAACTGCCGAG 351 529 849 Antisense
TGCCGAGAAATTTGTATTCGCTCAT 633 583 867 Antisense
GGAATTTGCTGAAACCATCCGTCCC 230 529 930 Antisense
ATCCGTCCCGTTTTCAAGAACACTG 252 37 946 Antisense
AGAACACTGTTGTCTATTTAACTGG 617 69 962 Antisense
TTGGATTGGGACGCCCAGCAACTGC 663 707 1046 Antisense
GCAACTGCAGAACCAGATCTTCCAA 703 319 1063 Antisense
ATGGAGATGTACCGTCAGCAGTGAA 312 51 1100 Antisense
AAAGCTGCGCAATTGTTTGTAGATG 493 123 1282 Antisense
Sequence Source Affymetrix Proprietary Database