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[188835_at] 7TM receptor

Description F22B8.5 /REP_DB=WormBase Gene ID /WP=CE15883 /TR=O45393 /GB=CAB05496.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_high1_10_10 > 52      6grp_total > 62      4grp_total > 12      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 48.6
(3)
A 		33
(-0.1)
A 		18.3
(-3)
A 		29.7
(-0.7)
A 		30
B 15.7
(-1.8)
A 		30.7
(0.1)
A 		6.2
(-3)
A 		54.3
(3)
A 		48
C 23.4
(-1.4)
A 		5.7
(-3)
A 		11.7
(-2.4)
A 		70.3
(3)
A 		65
avr 29.2
(-0.4) 		23.1
(-1.3) 		12.1
(-3) 		51.4
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 157.3
(-3)
P 		347.9
(1)
P 		446.4
(3)
P 		226.6
(-1.6)
P 		215.1
(-1.8)
P 		191.3
(-2.3)
P 		289
B 126.3
(-3)
A 		278.5
(1.4)
P 		333.6
(3)
P 		263.8
(1)
P 		216.2
(-0.4)
P 		154.2
(-2.2)
P 		207
C 93.3
(-3)
P 		198.8
(-1.2)
P 		438.5
(3)
P 		275.3
(0.2)
P 		208.5
(-1)
P 		169.5
(-1.7)
P 		345
avr 125.6
(-3) 		275.1
(0.2) 		406.2
(3) 		255.2
(-0.2) 		213.3
(-1.1) 		171.7
(-2) 		281
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.7
(3)
A 		7.2
(-1.7)
A 		4.8
(-2.8)
A 		4.4
(-3)
A 		13
B 5
(-0.9)
A 		7.6
(0.6)
A 		1.4
(-3)
A 		11.6
(3)
A 		10
C 7.8
(0.6)
A 		1.6
(-3)
A 		4.1
(-1.5)
A 		11.9
(3)
A 		10
avr 10.2
(3) 		5.5
(-1.1) 		3.4
(-3) 		9.3
(2.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 29
(-3)
P 		123.7
(3)
P 		97.2
(1.3)
P 		57.5
(-1.2)
P 		64.9
(-0.7)
P 		46.6
(-1.9)
P 		95
B 44
(-3)
A 		92.7
(3)
P 		81
(1.6)
P 		69.9
(0.2)
P 		87.9
(2.4)
P 		57.5
(-1.3)
P 		49
C 34.6
(-3)
P 		60.7
(-1)
P 		111.6
(3)
P 		55.4
(-1.4)
P 		67.5
(-0.4)
P 		56.8
(-1.3)
P 		77
avr 35.9
(-3) 		92.4
(2.6) 		96.6
(3) 		60.9
(-0.5) 		73.4
(0.7) 		53.6
(-1.3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188835_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14183
Sequence Type Exemplar sequence
Representative Public ID F22B8.5 NCBI
Target Description F22B8.5 /REP_DB=WormBase Gene ID /WP=CE15883 /TR=O45393 /GB=CAB05496.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074651(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074651 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-7) (str-7) mRNA, complete cds. 11/11 None
SNAP00000002257 ENSEMBL cdna:SNAP chromosome:CEL140:V:16100580:16101435:-1 11/11 None
F22B8.5 ENSEMBL cdna:known chromosome:CEL140:V:16100580:16102117:-1 gene:F22B8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16100579-16102117(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-7
Ensembl F22B8.5
Entrez Gene 184824 Entrez gene
SwissProt O45393 EMBL-EBI
WormBase CE15883 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05496 Hypothetical protein F22B8.5 [Caenorhabditis elegans] ref|NP_507052.1| Seven TM Receptor family member (str-7) [Caenorhabditis elegans] 0.0
blast CAB09419 Hypothetical protein F57A10.1 [Caenorhabditis elegans] ref|NP_506926.1| Seven TM Receptor family member (str-9) [Caenorhabditis elegans] 1.0E-145
blast CAB05496 Hypothetical protein F22B8.5 [Caenorhabditis elegans] ref|NP_507052.1| Seven TM Receptor family member (str-7) [Caenorhabditis elegans] 1.0E-144
blast CAE66307 Hypothetical protein CBG11557 [Caenorhabditis briggsae] 1.0E-143
blast CAE66307 Hypothetical protein CBG11557 [Caenorhabditis briggsae] 1.0E-100
blast CAB09419 Hypothetical protein F57A10.1 [Caenorhabditis elegans] ref|NP_506926.1| Seven TM Receptor family member (str-9) [Caenorhabditis elegans] 2.0E-99
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507052.1 7 15-37,50-72,97-119,140-162,206-228,249-271,291-313
F22B8.5 7 15-37,50-72,97-119,140-162,206-228,249-271,291-313
SNAP00000002257 4 7-29,44-66,161-183,198-220
Sequence
Target Sequence 
>C. ELEGANS:188835_AT
gggttggctattacacattcttcggaatcctctggtctctaacagtcggttacttcttcg
cgatggatgagtttagcatggagtatctaagcaaagagatttcattgcggtatgaaagaa
atattacggatactccaatcctcgatctgatagcctatcaaggcaatgatttccgctgga
aaaacttaacaggcgcactgatgatgactgacatctcaacatttcagtacacgattatca
ttgtttgcggctataatatgtatcatgggatgcaaacaaaactctccctgctttctgcac
aacaccgtcgtcttcatcggcaattcttcagagctctaacaattcaggtcgtctccccca
caataatcctcttctgcccagtgttcttcatgatctatgttccattcgctgatttggaaa
tgagcttcccgtcctgcatcattcaaagtggcttcacagtgtatccagccctcgattcag
ttatcatgatgtgctgtgtatcggaatactttcgaatcttcaaaaaactatttgtttcga
tgaaacagcccaaatcatcccaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTTGGCTATTACACATTCTTCGG 498 495 434 Antisense
AATCCTCTGGTCTCTAACAGTCGGT 181 167 459 Antisense
TAACAGTCGGTTACTTCTTCGCGAT 398 637 473 Antisense
TACTCCAATCCTCGATCTGATAGCC 197 647 564 Antisense
TCAAGGCAATGATTTCCGCTGGAAA 296 633 591 Antisense
GACATCTCAACATTTCAGTACACGA 8 371 643 Antisense
GATGCAAACAAAACTCTCCCTGCTT 636 411 702 Antisense
AGCTCTAACAATTCAGGTCGTCTCC 559 79 765 Antisense
GATCTATGTTCCATTCGCTGATTTG 16 421 825 Antisense
CCCGTCCTGCATCATTCAAAGTGGC 95 261 861 Antisense
TGAAACAGCCCAAATCATCCCAAGA 162 573 974 Antisense
Sequence Source Affymetrix Proprietary Database