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[188834_at] 7TM receptor

Description T01G5.5 /REP_DB=WormBase Gene ID /WP=CE12982 /TR=O17942 /GB=CAB03190.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 52      4grp_total > 10      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 37.9
(-2)
A 		78.8
(-0.6)
A 		9.3
(-3)
A 		184.1
(3)
P 		175
B 60.3
(-2.1)
A 		60
(-2.1)
A 		48.9
(-3)
A 		123.7
(3)
P 		75
C 50
(-2.5)
A 		58.4
(-2.2)
A 		39.3
(-3)
A 		179.6
(3)
P 		140
avr 49.4
(-2.2) 		65.7
(-1.5) 		32.5
(-3) 		162.5
(3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 41.3
(-0.6)
A 		46.1
(-0.1)
A 		77.3
(3)
A 		33.4
(-1.3)
A 		16.7
(-3)
A 		33.7
(-1.3)
A 		61
B 17.1
(-1.1)
A 		27.6
(0.2)
A 		43.8
(2.3)
A 		48.9
(3)
A 		19.8
(-0.8)
A 		2.5
(-3)
A 		46
C 37.9
(-0.6)
A 		38.1
(-0.5)
A 		75.6
(3)
A 		56.8
(1.2)
A 		52.2
(0.8)
A 		12.2
(-3)
A 		63
avr 32.1
(-1.1) 		37.3
(-0.4) 		65.6
(3) 		46.4
(0.7) 		29.6
(-1.4) 		16.1
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 13.8
(-0.2)
A 		17.1
(0.6)
A 		2.4
(-3)
A 		27
(3)
P 		25
B 19.2
(0.1)
A 		14.8
(-1.6)
A 		11.3
(-3)
A 		26.4
(3)
P 		15
C 16.6
(-2)
A 		16.8
(-1.9)
A 		13.7
(-3)
A 		30.3
(3)
P 		17
avr 16.5
(-0.6) 		16.2
(-0.7) 		9.1
(-3) 		27.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.6
(-1.7)
A 		16.4
(2.8)
A 		16.8
(3)
A 		8.5
(-1.2)
A 		5
(-3)
A 		8.2
(-1.4)
A 		12
B 5.9
(-0.5)
A 		9.2
(1.2)
A 		10.6
(1.9)
A 		12.9
(3)
A 		8
(0.6)
A 		0.9
(-3)
A 		12
C 14
(0.9)
A 		11.6
(-0)
A 		19.3
(3)
A 		11.4
(-0.1)
A 		16.9
(2.1)
A 		4.1
(-3)
A 		15
avr 9.2
(-0.4) 		12.4
(1.3) 		15.6
(3) 		10.9
(0.5) 		10
(-0) 		4.4
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188834_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12951
Sequence Type Exemplar sequence
Representative Public ID T01G5.5 NCBI
Target Description T01G5.5 /REP_DB=WormBase Gene ID /WP=CE12982 /TR=O17942 /GB=CAB03190.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074331(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074331 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-171) (str-171) mRNA, complete cds. 11/11 None
T01G5.5 ENSEMBL cdna:known chromosome:CEL140:V:15133083:15135102:-1 gene:T01G5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15133082-15135102(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-171
Ensembl T01G5.5
Entrez Gene 187958 Entrez gene
SwissProt O17942 EMBL-EBI
WormBase CE12982 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03270 Hypothetical protein T01G5.5 [Caenorhabditis elegans] emb|CAB03190.1| Hypothetical protein T01G5.5 [Caenorhabditis elegans] ref|NP_506732.1| Seven TM Receptor family member (str-171) [Caenorhabditis elegans] 0.0
blast CAE74778 Hypothetical protein CBG22608 [Caenorhabditis briggsae] 1.0E-140
blast NP_500660 Seven TM Receptor family member (str-172) [Caenorhabditis elegans] gb|AAF60441.2| Seven tm receptor protein 172 [Caenorhabditis elegans] 6.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.2E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506732.1 7 15-34,46-68,91-113,134-156,203-225,250-272,282-304
T01G5.5 7 15-34,46-68,91-113,134-156,203-225,250-272,282-304
Sequence
Target Sequence 
>C. ELEGANS:188834_AT
taccactctggttcatgattccgatacttggcggtgtcagttggacacttgtctcgtggt
tttgctttccaatgaacccggtcacatccggttatatcggacccgatctctacgaaagtt
tcaagttggacatcaaccaatccgcctacgcagctgctttattctatcctccagatgtaa
atggaaaaaagttgttcaacttgaaagctggacttggattaattctctacttgctgataa
tggcaatcccattttttgtggtgatttacgttgggattaaaagtgtatcaaaaatcaagc
aactgccgtcgtcaaattatggaaaagggttacaaatgcaattgcataatgcacttgttg
cgcagacaattatcccggttgtcttcttatttgttccatttggagtccttttcatctgcc
cgatttttgagattaactgccagtttcttgcgacaattctcacatttgtttatgcaatct
acccggttcttgatcctctgccaatatttttctttgttcaaaactaccgtaatgcgttgt
ccgagtggttctcgtgtttccgatgtaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCACTCTGGTTCATGATTCCGAT 60 651 413 Antisense
GACACTTGTCTCGTGGTTTTGCTTT 76 367 456 Antisense
TTTTGCTTTCCAATGAACCCGGTCA 313 677 472 Antisense
GCCTACGCAGCTGCTTTATTCTATC 76 281 556 Antisense
GGTTGTCTTCTTATTTGTTCCATTT 530 507 789 Antisense
CCTTTTCATCTGCCCGATTTTTGAG 221 269 819 Antisense
AACTGCCAGTTTCTTGCGACAATTC 354 141 847 Antisense
ATGCAATCTACCCGGTTCTTGATCC 20 43 884 Antisense
TGATCCTCTGCCAATATTTTTCTTT 605 565 903 Antisense
GTAATGCGTTGTCCGAGTGGTTCTC 684 461 941 Antisense
GTGGTTCTCGTGTTTCCGATGTAGA 578 489 957 Antisense
Sequence Source Affymetrix Proprietary Database