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[188833_at] 7TM receptor

Description T10C6.1 /REP_DB=WormBase Gene ID /WP=CE16376 /TR=O18080 /GB=CAB07658.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 33      4grp_total > 13      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 49.2
(-0.4)
A 		9
(-2.8)
A 		6.1
(-3)
A 		107.2
(3)
A 		101
B 41.5
(1.7)
A 		19.9
(-1.1)
A 		4.9
(-3)
A 		52
(3)
A 		47
C 41.1
(-0.6)
A 		11.1
(-2.4)
A 		1.6
(-3)
A 		101.8
(3)
A 		100
avr 43.9
(-0.1) 		13.3
(-2.3) 		4.2
(-3) 		87
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 43.4
(3)
A 		5.8
(-2.7)
A 		43.3
(3)
A 		3.9
(-3)
A 		27.1
(0.5)
A 		4.9
(-2.8)
A 		40
B 24.9
(3)
A 		11.9
(-0.5)
A 		5.1
(-2.4)
A 		2.7
(-3)
A 		20.4
(1.8)
A 		4.3
(-2.6)
A 		22
C 3.2
(-3)
A 		35.7
(3)
A 		15.8
(-0.7)
A 		8.5
(-2)
A 		3.8
(-2.9)
A 		8.2
(-2.1)
A 		33
avr 23.8
(3) 		17.8
(1.1) 		21.4
(2.2) 		5
(-3) 		17.1
(0.9) 		5.8
(-2.7) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.9
(3)
A 		1.9
(-2.9)
A 		1.6
(-3)
A 		15.7
(2.2)
A 		16
B 13.2
(3)
A 		4.9
(-1.1)
A 		1.1
(-3)
A 		11.1
(2)
A 		12
C 13.6
(1.7)
A 		3.2
(-2.1)
A 		0.6
(-3)
A 		17.2
(3)
A 		17
avr 14.9
(3) 		3.3
(-2) 		1.1
(-3) 		14.7
(2.9) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 8
(2)
A 		2
(-2.3)
A 		9.4
(3)
A 		1
(-3)
A 		8.2
(2.1)
A 		1.2
(-2.9)
A 		8
B 8.7
(3)
A 		4
(-0.5)
A 		1.2
(-2.6)
A 		0.7
(-3)
A 		8.3
(2.7)
A 		1.6
(-2.3)
A 		8
C 1.2
(-3)
A 		10.9
(3)
A 		4
(-1.3)
A 		1.7
(-2.7)
A 		1.2
(-3)
A 		2.7
(-2.1)
A 		10
avr 6
(3) 		5.6
(2.5) 		4.9
(1.7) 		1.1
(-3) 		5.9
(2.9) 		1.8
(-2.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188833_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14038
Sequence Type Exemplar sequence
Representative Public ID T10C6.1 NCBI
Target Description T10C6.1 /REP_DB=WormBase Gene ID /WP=CE16376 /TR=O18080 /GB=CAB07658.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074620(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074620 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-232) (str-232) mRNA, complete cds. 11/11 None
SNAP00000027902 ENSEMBL cdna:SNAP chromosome:CEL140:V:16017092:16018281:-1 11/11 None
GENEFINDER00000027918 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16017092:16018335:-1 11/11 None
T10C6.1 ENSEMBL cdna:known chromosome:CEL140:V:16017092:16018335:-1 gene:T10C6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16017091-16018335(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-232
Ensembl T10C6.1
Entrez Gene 188372 Entrez gene
SwissProt O18080 EMBL-EBI
WormBase CE16376 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07658 Hypothetical protein T10C6.1 [Caenorhabditis elegans] ref|NP_507021.1| Seven TM Receptor family member (str-232) [Caenorhabditis elegans] 0.0
blast CAB07658 Hypothetical protein T10C6.1 [Caenorhabditis elegans] ref|NP_507021.1| Seven TM Receptor family member (str-232) [Caenorhabditis elegans] 1.0E-157
blast CAB07554 Hypothetical protein C06C6.2 [Caenorhabditis elegans] ref|NP_507018.1| Seven TM Receptor family member (str-233) [Caenorhabditis elegans] 3.0E-93
blast CAE74814 Hypothetical protein CBG22650 [Caenorhabditis briggsae] 4.0E-93
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507021.1 7 20-39,52-74,99-121,141-163,209-231,256-278,293-315
T10C6.1 7 20-39,52-74,99-121,141-163,209-231,256-278,293-315
SNAP00000027902 6 5-24,34-56,77-99,146-168,193-215,230-252
GENEFINDER00000027918 7 20-39,52-74,99-121,141-163,209-231,256-278,293-315
Sequence
Target Sequence 
>C. ELEGANS:188833_AT
gacccgtcactggcaaagtttcaaaatatccgattcggatttattggaagcttcttctac
ccgcagcttgccgatggaacaaaagtgatcaactgggactcgtttatcggaatggctttc
agcacttgtattctttttggatccgagtatctgatgcttttctacgcagtcaaatcatac
ctgcttaccaagacactcatgcaatcagcatgctccgccatctataaaaaacttcagtgg
caactattctacgctcttgtttctcaaacattcattccaattctgcttatgcaagttcca
atgtctgcaatcttcgtttcaatattttttgacatgtccaccccaactcttggtcatatt
caaacctttactatttcaatttacctggcaactgacgcgcttcccacaatgttcataatc
aagccctacagggataaaatcatatatagaattcagtgcatcgcatcaatcttcaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCCGTCACTGGCAAAGTTTCAAA 104 383 535 Antisense
GGACTCGTTTATCGGAATGGCTTTC 63 525 630 Antisense
GGCTTTCAGCACTTGTATTCTTTTT 69 539 648 Antisense
GTATCTGATGCTTTTCTACGCAGTC 285 455 681 Antisense
GTCAAATCATACCTGCTTACCAAGA 499 463 703 Antisense
TCAGTGGCAACTATTCTACGCTCTT 93 623 768 Antisense
TCCAATGTCTGCAATCTTCGTTTCA 509 587 831 Antisense
TATTTTTTGACATGTCCACCCCAAC 247 663 857 Antisense
TCAATTTACCTGGCAACTGACGCGC 392 633 910 Antisense
GCGCTTCCCACAATGTTCATAATCA 41 289 931 Antisense
CAGTGCATCGCATCAATCTTCAAAG 90 209 988 Antisense
Sequence Source Affymetrix Proprietary Database