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[188832_at] 7TM receptor

Description C06C6.2 /REP_DB=WormBase Gene ID /WP=CE15596 /TR=O62030 /GB=CAB07554.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 02      4grp_total > 10      6grp_cgc > 43      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 5.4
(-3)
A 		7.4
(-1.3)
A 		10.3
(1.3)
A 		12.3
(3)
A 		7
B 13.9
(0.4)
A 		20.2
(3)
A 		5.9
(-3)
A 		15.4
(1)
A 		14
C 7.8
(-2.9)
A 		6.1
(-3)
A 		6.3
(-3)
A 		93
(3)
A 		87
avr 9
(-2.7) 		11.2
(-2.3) 		7.5
(-3) 		40.2
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 5.5
(0.3)
A 		2.1
(-3)
A 		6.8
(1.6)
A 		6.6
(1.4)
A 		8.2
(3)
A 		5.3
(0.1)
A 		6
B 6.8
(-1.9)
A 		23.8
(3)
A 		3.1
(-3)
A 		6.7
(-2)
A 		4.7
(-2.5)
A 		4.6
(-2.6)
A 		21
C 14
(3)
A 		7.9
(-0.7)
A 		5.8
(-2)
A 		5.7
(-2)
A 		4.1
(-3)
A 		6.9
(-1.3)
A 		10
avr 8.8
(0.5) 		11.3
(3) 		5.2
(-3) 		6.3
(-1.9) 		5.7
(-2.5) 		5.6
(-2.6) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2
(-0.8)
A 		1.6
(-3)
A 		2.7
(3)
A 		1.8
(-1.9)
A 		1
B 4.4
(2)
A 		5
(3)
A 		1.4
(-3)
A 		3.3
(0.2)
A 		4
C 2.6
(-2.6)
A 		1.7
(-3)
A 		2.2
(-2.8)
A 		15.7
(3)
A 		14
avr 3
(-1.9) 		2.8
(-2.1) 		2.1
(-3) 		6.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1
(-2)
A 		0.7
(-3)
A 		1.5
(-0.3)
A 		1.7
(0.3)
A 		2.5
(3)
A 		1.3
(-1)
A 		2
B 2.4
(-1.6)
A 		7.9
(3)
A 		0.7
(-3)
A 		1.8
(-2.1)
A 		1.9
(-2)
A 		1.7
(-2.2)
A 		7
C 5.2
(3)
A 		2.4
(-1.1)
A 		1.5
(-2.4)
A 		1.1
(-3)
A 		1.3
(-2.7)
A 		2.3
(-1.2)
A 		4
avr 2.9
(1.1) 		3.7
(3) 		1.2
(-3) 		1.5
(-2.3) 		1.9
(-1.3) 		1.8
(-1.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188832_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13714
Sequence Type Exemplar sequence
Representative Public ID C06C6.2 NCBI
Target Description C06C6.2 /REP_DB=WormBase Gene ID /WP=CE15596 /TR=O62030 /GB=CAB07554.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074617 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-233) (str-233) mRNA, complete cds. 11/11 None
SNAP00000040514 ENSEMBL cdna:SNAP chromosome:CEL140:V:16010915:16012265:-1 10/11 None
GENEFINDER00000040522 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16010915:16012349:-1 10/11 None
C06C6.2 ENSEMBL cdna:known chromosome:CEL140:V:16010915:16012247:-1 gene:C06C6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16010914-16012247(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-233
Ensembl C06C6.2
Entrez Gene 182307 Entrez gene
SwissProt O62030 EMBL-EBI
WormBase CE15596 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07554 Hypothetical protein C06C6.2 [Caenorhabditis elegans] ref|NP_507018.1| Seven TM Receptor family member (str-233) [Caenorhabditis elegans] 0.0
blast CAB07554 Hypothetical protein C06C6.2 [Caenorhabditis elegans] ref|NP_507018.1| Seven TM Receptor family member (str-233) [Caenorhabditis elegans] 1.0E-179
blast CAB07659 Hypothetical protein T10C6.2 [Caenorhabditis elegans] ref|NP_507020.1| T10C6.2 [Caenorhabditis elegans] 1.0E-133
blast CAB07659 Hypothetical protein T10C6.2 [Caenorhabditis elegans] ref|NP_507020.1| T10C6.2 [Caenorhabditis elegans] 1.0E-126
blast CAB07667 Hypothetical protein C06C6.1 [Caenorhabditis elegans] emb|CAB07561.1| Hypothetical protein C06C6.1 [Caenorhabditis elegans] ref|NP_507019.1| C06C6.1 [Caenorhabditis elegans] 1.0E-124
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507018.1 7 25-47,54-76,102-124,144-166,196-218,247-269,284-301
C06C6.2 7 25-47,54-76,102-124,144-166,196-218,247-269,284-301
SNAP00000040514 5 31-53,60-82,108-130,177-199,232-254
GENEFINDER00000040522 5 59-81,88-110,136-158,205-227,260-282
Sequence
Target Sequence 
>C. ELEGANS:188832_AT
ttggacttcacgaagctccttcacattctttttttggggaagcattcctctacttgttgc
tcttatccaacagtcctacccgatttccctggaaaacaaaactgtcgggtttgttgcagt
atatttctacccaggactagcagatggaagtaccacgatcaactgggactcattcatcgg
catgtcactctgtacttgcattctatttggttccgaatctctaatgctctactttgctct
aaaatcctacctcgtcacaaagtccctcatgacttccgcttactccgcaaactttcaaaa
gcttcaatggcaactgttctacgcgctcgtgtcccaggctgtgattcctattttcttcat
gcaaatcccactttctgcaatttatattaccttgtttgccaacatttctacaccattttt
cggacatcttcaggaattaacaatttccttctacctagccactgatgcgcttcccacaat
tttcattataaaaccataccgagagtttattttttcaacactccgctgtttgaaattatg
caaatctgccaactctgcaaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGACTTCACGAAGCTCCTTCACA 272 707 426 Antisense
TCAACTGGGACTCATTCATCGGCAT 286 631 584 Antisense
CATCGGCATGTCACTCTGTACTTGC 468 211 600 Antisense
GTACTTGCATTCTATTTGGTTCCGA 185 461 617 Antisense
TGGTTCCGAATCTCTAATGCTCTAC 527 551 633 Antisense
TTCAATGGCAACTGTTCTACGCGCT 466 685 728 Antisense
GTCCCAGGCTGTGATTCCTATTTTC 488 475 756 Antisense
TCTTCATGCAAATCCCACTTTCTGC 436 615 779 Antisense
TGCCAACATTTCTACACCATTTTTC 182 587 822 Antisense
GCGCTTCCCACAATTTTCATTATAA 42 289 892 Antisense
GCAAATCTGCCAACTCTGCAAACCA 594 317 965 Antisense
Sequence Source Affymetrix Proprietary Database