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[188831_at] 7TM receptor

Description T10C6.2 /REP_DB=WormBase Gene ID /WP=CE16377 /TR=O18081 /GB=CAB07659.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 52      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 34.5
(0.1)
A 		22.7
(-1.2)
A 		6.3
(-3)
A 		60.7
(3)
A 		54
B 31.3
(1.9)
A 		4.2
(-3)
A 		4.4
(-3)
A 		37.4
(3)
A 		33
C 28.9
(-0.2)
A 		29.4
(-0)
A 		21.5
(-3)
A 		37.4
(3)
A 		16
avr 31.6
(0.6) 		18.8
(-1.6) 		10.7
(-3) 		45.2
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 2.2
(-2.9)
A 		1.6
(-3)
A 		28.6
(3)
A 		3.8
(-2.5)
A 		2.2
(-2.9)
A 		7.2
(-1.8)
A 		27
B 8.7
(-1.6)
A 		29.1
(3)
A 		28
(2.8)
A 		2.4
(-3)
A 		22.6
(1.5)
A 		2.7
(-2.9)
A 		27
C 1
(-3)
A 		25.7
(0.3)
A 		31
(1.1)
A 		45.3
(3)
A 		1.7
(-2.9)
A 		6.3
(-2.3)
A 		44
avr 4
(-3) 		18.8
(0.5) 		29.2
(3) 		17.2
(0.1) 		8.8
(-1.9) 		5.4
(-2.7) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.6
(3)
A 		4.9
(-1.2)
A 		1.6
(-3)
A 		8.9
(1)
A 		11
B 10
(3)
A 		1
(-3)
A 		1
(-3)
A 		8
(1.7)
A 		9
C 9.6
(3)
A 		8.5
(1)
A 		7.5
(-0.8)
A 		6.3
(-3)
A 		3
avr 10.7
(3) 		4.8
(-1.8) 		3.4
(-3) 		7.7
(0.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.6
(-2.8)
A 		6.2
(3)
A 		1
(-2.4)
A 		0.7
(-2.7)
A 		1.8
(-1.6)
A 		6
B 3
(-1.4)
A 		9.7
(3)
A 		6.8
(1.1)
A 		0.6
(-3)
A 		9.2
(2.7)
A 		1
(-2.7)
A 		9
C 0.4
(-3)
A 		7.9
(2.2)
A 		7.9
(2.2)
A 		9.1
(3)
A 		0.6
(-2.9)
A 		2.1
(-1.8)
A 		9
avr 1.3
(-3) 		6.1
(2.1) 		7
(3) 		3.6
(-0.6) 		3.5
(-0.7) 		1.6
(-2.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188831_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13928
Sequence Type Exemplar sequence
Representative Public ID T10C6.2 NCBI
Target Description T10C6.2 /REP_DB=WormBase Gene ID /WP=CE16377 /TR=O18081 /GB=CAB07659.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074619(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074619 NCBI Caenorhabditis elegans T10C6.2 (T10C6.2) mRNA, complete cds. 11/11 None
T10C6.2 ENSEMBL cdna:known chromosome:CEL140:V:16015120:16016809:-1 gene:T10C6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027900 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16015119-16016809(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Ensembl T10C6.2
Entrez Gene 188373 Entrez gene
SwissProt O18081 EMBL-EBI
WormBase CE16377 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07659 Hypothetical protein T10C6.2 [Caenorhabditis elegans] ref|NP_507020.1| T10C6.2 [Caenorhabditis elegans] 0.0
blast CAB07667 Hypothetical protein C06C6.1 [Caenorhabditis elegans] emb|CAB07561.1| Hypothetical protein C06C6.1 [Caenorhabditis elegans] ref|NP_507019.1| C06C6.1 [Caenorhabditis elegans] 1.0E-147
blast CAB07554 Hypothetical protein C06C6.2 [Caenorhabditis elegans] ref|NP_507018.1| Seven TM Receptor family member (str-233) [Caenorhabditis elegans] 1.0E-140
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507020.1 6 30-49,59-76,115-137,152-174,217-239,272-294
T10C6.2 6 30-49,59-76,115-137,152-174,217-239,272-294
Sequence
Target Sequence 
>C. ELEGANS:188831_AT
gacaatcccttgttctatatttctgggaagaaattattacgtgaataatgttgtcagcca
aaagtcgtacccaatttctatggaaaacaaaacagttgtgtatttctacccagaactatt
tgatggaacaactacaatcaactgggactcttttattggaacatttctttgtgtctgtat
actatttggctccgagtccctgatgctctattttgctctaaaatcctacttcgtcacaaa
gtccctcatgacttccgcctactctgcaaacttccaaaaacttcaatggcagatgttcta
cgccttggtgtctcaaacagggattccaattcttttcatgcaatttccaatgactttaat
ctatatcacttgccttgccaacatctccacatcatttttcgggaaacttcagcaattaac
aatttcattctatctggcaactgacgctcttccaaccattttcatcataaaaccatatcg
agagtttattctcgataatttccaaaagctgaaactttcctactgcaagccaactctttt
tgcaagtcaaatggtaacgcacaccgatgtttcacgcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATCCCTTGTTCTATATTTCTG 227 365 510 Antisense
GTTGTCAGCCAAAAGTCGTACCCAA 538 437 559 Antisense
ACAGTTGTGTATTTCTACCCAGAAC 664 105 601 Antisense
GTCTGTATACTATTTGGCTCCGAGT 6 471 682 Antisense
TCCCTGATGCTCTATTTTGCTCTAA 707 597 706 Antisense
TACGCCTTGGTGTCTCAAACAGGGA 279 649 808 Antisense
CCAACATCTCCACATCATTTTTCGG 199 277 887 Antisense
ATTCTATCTGGCAACTGACGCTCTT 531 11 936 Antisense
TGAAACTTTCCTACTGCAAGCCAAC 83 573 1019 Antisense
CAAGCCAACTCTTTTTGCAAGTCAA 313 185 1035 Antisense
TAACGCACACCGATGTTTCACGCGC 317 639 1064 Antisense
Sequence Source Affymetrix Proprietary Database