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[188830_at] 7TM receptor

Description T13F3.1 /REP_DB=WormBase Gene ID /WP=CE16407 /TR=O18084 /GB=CAB07668.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 71      4grp_total > 43      6grp_cgc > 85      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 41
(-2.1)
A 		39.6
(-3)
A 		48.7
(3)
A 		44.9
(0.5)
A 		9
B 26.2
(-1.6)
A 		73.8
(3)
A 		11.9
(-3)
A 		31.3
(-1.1)
A 		62
C 46.6
(-1.4)
A 		67.4
(3)
M 		39.1
(-3)
A 		43.1
(-2.2)
A 		28
avr 37.9
(-2) 		60.3
(3) 		33.2
(-3) 		39.8
(-1.5) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 71.8
(-0.6)
A 		79.4
(0.3)
P 		50.1
(-3)
A 		103.6
(3)
P 		56.7
(-2.3)
A 		65.3
(-1.3)
A 		54
B 26.8
(-3)
A 		54.5
(-0.6)
A 		66.3
(0.5)
P 		94.8
(3)
P 		56.7
(-0.4)
P 		48.3
(-1.1)
P 		68
C 49.1
(-2.2)
A 		73.5
(-0.4)
P 		118.5
(3)
P 		96.9
(1.4)
M 		76
(-0.2)
M 		38
(-3)
A 		81
avr 49.2
(-3) 		69.1
(-0.6) 		78.3
(0.5) 		98.4
(3) 		63.1
(-1.3) 		50.5
(-2.8) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 14.9
(3)
A 		8.6
(-1.6)
A 		12.7
(1.4)
A 		6.6
(-3)
A 		8
B 8.4
(-0.8)
A 		18.2
(3)
A 		2.8
(-3)
A 		6.7
(-1.5)
A 		15
C 15.4
(1)
A 		19.4
(3)
M 		13.6
(0.1)
A 		7.3
(-3)
A 		12
avr 12.9
(1.2) 		15.4
(3) 		9.7
(-1) 		6.9
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 13.2
(-2.2)
A 		28.2
(3)
P 		10.9
(-3)
A 		26.3
(2.3)
P 		17.1
(-0.8)
A 		15.9
(-1.3)
A 		17
B 9.3
(-3)
A 		18.2
(0.4)
A 		16.1
(-0.4)
P 		25.1
(3)
P 		23.1
(2.2)
P 		18
(0.3)
P 		16
C 18.2
(-1.1)
A 		22.4
(0.3)
P 		30.2
(3)
P 		19.5
(-0.7)
M 		24.6
(1.1)
M 		12.7
(-3)
A 		18
avr 13.6
(-3) 		22.9
(2.6) 		19.1
(0.3) 		23.6
(3) 		21.6
(1.8) 		15.5
(-1.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188830_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14726
Sequence Type Exemplar sequence
Representative Public ID T13F3.1 NCBI
Target Description T13F3.1 /REP_DB=WormBase Gene ID /WP=CE16407 /TR=O18084 /GB=CAB07668.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074707(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074707 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-183) (str-183) mRNA, complete cds. 11/11 None
GENEFINDER00000028760 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16278496:16280230:1 11/11 None
T13F3.1 ENSEMBL cdna:known chromosome:CEL140:V:16278496:16280281:1 gene:T13F3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16278495-16280281(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-183
Ensembl T13F3.1
Entrez Gene 188478 Entrez gene
SwissProt O18084 EMBL-EBI
WormBase CE16407 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07668 Hypothetical protein T13F3.1 [Caenorhabditis elegans] ref|NP_507108.1| Seven TM Receptor family member (str-183) [Caenorhabditis elegans] 0.0
blast CAE69639 Hypothetical protein CBG15880 [Caenorhabditis briggsae] 1.0E-128
blast AAC48081 Seven tm receptor protein 185 [Caenorhabditis elegans] ref|NP_500561.1| Seven TM Receptor family member (str-185) [Caenorhabditis elegans] 1.0E-60
blast AAC48081 Seven tm receptor protein 185 [Caenorhabditis elegans] ref|NP_500561.1| Seven TM Receptor family member (str-185) [Caenorhabditis elegans] 2.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.3E-10
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507108.1 7 10-32,45-67,92-114,131-153,205-227,251-273,283-300
T13F3.1 7 10-32,45-67,92-114,131-153,205-227,251-273,283-300
GENEFINDER00000028760 7 10-32,45-67,92-114,131-153,205-227,251-273,283-300
Sequence
Target Sequence 
>C. ELEGANS:188830_AT
gcaatatgttttgggcccacttcagaagttagtgcagaagttgagaatagtattctggaa
tcttatgacttgaaaattgacgatatagtttatatcgctgcatttgtttggccgagaaat
gagactactggagtgaaatatctcaataaaagatccgcaattggaattggttttgatcag
ttagttgtgattatctcacttactgttattgcatattgtgggacatgttgctactataaa
atacaacagcaaatgagggttgcaatttctttgagcaaaattacgaaaaacctacatcgt
caactgttctacgctttggcaatccagaccgcaataccaatgcttctcctccatcttccc
gtttctatactcttcatgtttccaattatggattcaaacttggggatttttaccggcttc
gtcacaatcacgattgccgcctacccggcaattgaccctctaccaactatgcttgtcatt
gagagctatcgaagtgcagtttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATATGTTTTGGGCCCACTTCAG 254 321 460 Antisense
ATATCGCTGCATTTGTTTGGCCGAG 278 21 551 Antisense
GATTATCTCACTTACTGTTATTGCA 618 429 648 Antisense
AAACCTACATCGTCAACTGTTCTAC 351 125 747 Antisense
AACTGTTCTACGCTTTGGCAATCCA 366 143 761 Antisense
AGACCGCAATACCAATGCTTCTCCT 226 71 785 Antisense
CCGTTTCTATACTCTTCATGTTTCC 627 263 818 Antisense
TTTTTACCGGCTTCGTCACAATCAC 136 675 866 Antisense
TCGTCACAATCACGATTGCCGCCTA 521 599 878 Antisense
CCCTCTACCAACTATGCTTGTCATT 689 259 915 Antisense
TGAGAGCTATCGAAGTGCAGTTTAC 86 567 939 Antisense
Sequence Source Affymetrix Proprietary Database