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[188829_at] PHD-finger.

Description K09A11.5 /REP_DB=WormBase Gene ID /WP=CE03476 /TR=Q21375 /GB=CAA90618.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=PHD-finger.
Cluster 6grp_total > 25      4grp_total > 34      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 16.1
(-3)
A 		113.3
(1.6)
A 		72.9
(-0.3)
A 		143.5
(3)
A 		127
B 47.6
(-3)
A 		105.8
(3)
A 		56.8
(-2.1)
A 		76
(-0.1)
A 		58
C 48.4
(-3)
A 		102.6
(2.2)
A 		75.9
(-0.3)
A 		110.4
(3)
A 		62
avr 37.4
(-3) 		107.2
(2.8) 		68.5
(-0.4) 		110
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 104
(3)
A 		100.9
(2.8)
A 		78.3
(1.4)
A 		9.2
(-3)
A 		9.8
(-3)
A 		76.4
(1.3)
A 		95
B 124.1
(3)
A 		77.5
(-0.6)
A 		60.8
(-1.9)
A 		86.6
(0.1)
A 		50.2
(-2.7)
A 		46.8
(-3)
A 		77
C 79.8
(2.4)
A 		87.7
(3)
A 		73.5
(1.9)
A 		10.9
(-3)
A 		81.4
(2.5)
A 		17.5
(-2.5)
A 		77
avr 102.6
(3) 		88.7
(1.8) 		70.9
(0.2) 		35.6
(-3) 		47.1
(-2) 		46.9
(-2) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 5.9
(-3)
A 		24.6
(3)
A 		19.1
(1.2)
A 		21
(1.8)
A 		19
B 15.2
(-2.1)
A 		26.1
(3)
A 		13.2
(-3)
A 		16.2
(-1.6)
A 		13
C 16
(-3)
A 		29.5
(3)
A 		26.5
(1.7)
A 		18.6
(-1.8)
A 		14
avr 12.4
(-3) 		26.7
(3) 		19.6
(0) 		18.6
(-0.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 19.2
(0)
A 		35.9
(3)
A 		17.1
(-0.4)
A 		2.3
(-3)
A 		2.9
(-2.9)
A 		18.6
(-0.1)
A 		34
B 43.2
(3)
A 		25.8
(-0.7)
A 		14.8
(-3)
A 		22.9
(-1.3)
A 		20.4
(-1.8)
A 		17.5
(-2.4)
A 		28
C 29.6
(3)
A 		26.8
(2.4)
A 		18.7
(0.6)
A 		2.2
(-3)
A 		26.3
(2.3)
A 		5.8
(-2.2)
A 		27
avr 30.7
(3) 		29.5
(2.7) 		16.9
(-0.8) 		9.1
(-3) 		16.5
(-0.9) 		14
(-1.6) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188829_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17889
Sequence Type Exemplar sequence
Representative Public ID K09A11.5 NCBI
Target Description K09A11.5 /REP_DB=WormBase Gene ID /WP=CE03476 /TR=Q21375 /GB=CAA90618.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=PHD-finger.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077805 NCBI Caenorhabditis elegans K09A11.5 (PHD-finger.) mRNA, complete cds. 11/11 None
GENEFINDER00000010032 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13275235:13278896:-1 11/11 None
K09A11.5 ENSEMBL cdna:known chromosome:CEL140:X:13275235:13278896:-1 gene:K09A11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010028 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13275253-13278896(-) 100.0 100.0
Public Domain and Genome References
Gene Title PHD-finger.
Ensembl K09A11.5
Entrez Gene 187186 Entrez gene
SwissProt Q21375 EMBL-EBI
WormBase CE34205 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90618 Hypothetical protein K09A11.5 [Caenorhabditis elegans] ref|NP_510206.2| K09A11.5 [Caenorhabditis elegans] 0.0
blast CAA92158 Hypothetical protein F17A2.3 [Caenorhabditis elegans] ref|NP_510057.1| F17A2.3 [Caenorhabditis elegans] 9.0E-25
blast CAA92158 Hypothetical protein F17A2.3 [Caenorhabditis elegans] ref|NP_510057.1| F17A2.3 [Caenorhabditis elegans] 8.0E-22
blast CAA97781 Hypothetical protein C44B9.4 [Caenorhabditis elegans] ref|NP_499397.2| C44B9.4 [Caenorhabditis elegans] 3.0E-11
Sequence
Target Sequence 
>C. ELEGANS:188829_AT
tgccgattcgtccaacagcgacaaatgcagcttgtgttccatcgcccatggtcgatatta
tcactttggacgatgaaattgaagatccatcagagggtactccccaatcgaattttttgt
caaatgatccggttgcaagaaatttggattcctctgattcgcgcaacacacactcttctt
ctgaagcaagcaacaaaacacctaagagaagttttgggatgatatcaccatcaggaatgg
aatccttccgtcaatcttcgtttgccaacgtgtcccatttcccttcttcatgttttccgg
caagctcaattttgagtttcggaccgcaacatatgtgtagccagcaattctcccaaaaac
caccaacgtcagcggctccacaaatgggtaatcccatcttctcaatcaattcaactggga
tagtaactaaaagacgttatttcagcaattccggaactcgatttagcacgacgaaagctg
cagatatggcaggcccgagcacttctggcagaaacttgcaaatgcgtcagccaactactc
agc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCGATTCGTCCAACAGCGACAAA 511 583 1046 Antisense
GTTCCATCGCCCATGGTCGATATTA 489 441 1081 Antisense
GATCCATCAGAGGGTACTCCCCAAT 553 411 1129 Antisense
AAATTTGGATTCCTCTGATTCGCGC 599 115 1185 Antisense
TCCGTCAATCTTCGTTTGCCAACGT 246 593 1292 Antisense
TCTTCATGTTTTCCGGCAAGCTCAA 176 615 1330 Antisense
TATGTGTAGCCAGCAATTCTCCCAA 98 655 1377 Antisense
TAATCCCATCTTCTCAATCAATTCA 686 635 1434 Antisense
GCAATTCCGGAACTCGATTTAGCAC 373 323 1490 Antisense
AGATATGGCAGGCCCGAGCACTTCT 673 65 1527 Antisense
CAAATGCGTCAGCCAACTACTCAGC 470 189 1564 Antisense
Sequence Source Affymetrix Proprietary Database