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[188828_at] 7TM receptor

Description T23D5.6 /REP_DB=WormBase Gene ID /WP=CE16446 /TR=O45805 /GB=CAB04817.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 39      4grp_total > 03      6grp_cgc > 08      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 33.6
(-3)
A 		42.5
(-2.7)
A 		50
(-2.4)
P 		187.5
(3)
P 		154
B 48.6
(-1.2)
P 		37.6
(-1.8)
A 		17.1
(-3)
A 		123.5
(3)
P 		106
C 24.9
(-2)
P 		6.5
(-3)
A 		6.5
(-3)
A 		116.8
(3)
P 		110
avr 35.7
(-2.4) 		28.9
(-2.8) 		24.5
(-3) 		142.6
(3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 52.2
(1.7)
A 		18.5
(-2.1)
A 		10.4
(-3)
A 		11.7
(-2.9)
A 		63.3
(3)
A 		28.5
(-0.9)
A 		53
B 14.7
(-1.3)
A 		11.3
(-1.8)
A 		43.4
(3)
A 		3.5
(-3)
A 		19.5
(-0.6)
A 		34.4
(1.6)
M 		40
C 26.5
(0.3)
A 		46.4
(3)
A 		2
(-3)
A 		11.9
(-1.7)
A 		24.2
(0)
A 		29.7
(0.7)
P 		44
avr 31.1
(2) 		25.4
(0.7) 		18.6
(-0.8) 		9
(-3) 		35.7
(3) 		30.9
(1.9) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 12.2
(-2)
A 		9.2
(-3)
A 		13.1
(-1.7)
P 		27.4
(3)
P 		18
B 15.5
(0.1)
P 		9.3
(-1.6)
A 		4
(-3)
A 		26.3
(3)
P 		22
C 8.2
(-0.9)
P 		1.9
(-3)
A 		2.3
(-2.9)
A 		19.7
(3)
P 		18
avr 12
(-1.2) 		6.8
(-2.9) 		6.5
(-3) 		24.5
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 9.6
(-0.4)
A 		6.6
(-1.5)
A 		2.3
(-3)
A 		3
(-2.8)
A 		19.1
(3)
A 		6.9
(-1.4)
A 		17
B 5.1
(-0.9)
A 		3.7
(-1.6)
A 		10.5
(1.8)
A 		0.9
(-3)
A 		7.9
(0.5)
A 		12.8
(3)
M 		12
C 9.8
(1.1)
A 		14.2
(3)
A 		0.5
(-3)
A 		2.4
(-2.2)
A 		7.8
(0.2)
A 		9.9
(1.1)
P 		14
avr 8.2
(0.9) 		8.2
(0.9) 		4.4
(-1.5) 		2.1
(-3) 		11.6
(3) 		9.9
(1.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188828_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13556
Sequence Type Exemplar sequence
Representative Public ID T23D5.6 NCBI
Target Description T23D5.6 /REP_DB=WormBase Gene ID /WP=CE16446 /TR=O45805 /GB=CAB04817.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074518(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074518 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-18) (str-18) mRNA, complete cds. 11/11 None
SNAP00000041588 ENSEMBL cdna:SNAP chromosome:CEL140:V:15743101:15744535:-1 11/11 None
GENEFINDER00000041599 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15743101:15744535:-1 11/11 None
T23D5.6 ENSEMBL cdna:known chromosome:CEL140:V:15743111:15744535:-1 gene:T23D5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15743110-15744535(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-18
Ensembl T23D5.6
Entrez Gene 188785 Entrez gene
SwissProt O45805 EMBL-EBI
WormBase CE16446 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04817 Hypothetical protein T23D5.6 [Caenorhabditis elegans] ref|NP_506919.1| Seven TM Receptor family member (str-18) [Caenorhabditis elegans] 0.0
blast CAB04818 Hypothetical protein T23D5.7 [Caenorhabditis elegans] ref|NP_506920.2| Seven TM Receptor family member (str-19) [Caenorhabditis elegans] 1.0E-141
blast AAC69234 Seven tm receptor protein 16 [Caenorhabditis elegans] ref|NP_503887.1| Seven TM Receptor family member (str-16) [Caenorhabditis elegans] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.0E-18
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.4E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506919.1 7 10-32,45-67,87-109,129-151,207-229,253-275,285-307
T23D5.6 7 10-32,45-67,87-109,129-151,207-229,253-275,285-307
SNAP00000041588 7 10-32,45-67,87-109,129-151,207-229,253-275,285-307
GENEFINDER00000041599 7 10-32,45-67,87-109,129-151,207-229,253-275,285-307
Sequence
Target Sequence 
>C. ELEGANS:188828_AT
atttcttgctgtcggtcttatacgcattatggtttggatttcaatgggcaatcggtctat
acaaactgaatgaagttgatcaatactcattagagtacatgcgtcaagtattggttgatg
tttacgatgtggacatctctcaagtcccatgtgtaattcatgtagtatatcaaaatgttg
caaactccactcattcattgattcgttggcggaatgtcatgtgcacgttcaatatggctt
tcatcatgattgtacaatatggagtcatgatttactgcggatcacgtttgtacgctgaaa
tggaggaaaagttgagcatgctgtcgccacaggcccggaaacttcacagacaaatattca
agaccttgctgcttcaaataacaacgccaacaattgtgctgttctccccgatcatctatg
tcatcaccgtgccatatctcgatcaggaactcagtgttcctacaggagtatttctgtccg
gattcaccctttacccagctctcgacgctttcattctcatgtatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCTTGCTGTCGGTCTTATACGC 66 17 404 Antisense
GATGTGGACATCTCTCAAGTCCCAT 479 407 529 Antisense
GTTGCAAACTCCACTCATTCATTGA 447 439 580 Antisense
GTTGGCGGAATGTCATGTGCACGTT 143 435 608 Antisense
GTGCACGTTCAATATGGCTTTCATC 595 479 624 Antisense
ACTGCGGATCACGTTTGTACGCTGA 215 99 677 Antisense
AGGCCCGGAAACTTCACAGACAAAT 667 53 734 Antisense
TGCTGCTTCAAATAACAACGCCAAC 563 581 770 Antisense
ACCGTGCCATATCTCGATCAGGAAC 313 89 829 Antisense
GGAGTATTTCTGTCCGGATTCACCC 37 517 868 Antisense
TCGACGCTTTCATTCTCATGTATGT 187 603 905 Antisense
Sequence Source Affymetrix Proprietary Database