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[188827_at] ankyrin like

Description C05A9.3 /REP_DB=WormBase Gene ID /WP=CE05223 /TR=Q17643 /GB=CAA94200.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ankyrin like
Cluster 6grp_total > 0      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 3.2
(-3)
A 		28.4
(0)
A 		4.6
(-2.8)
A 		52.9
(3)
A 		50
B 24
(-0.2)
A 		39.6
(2.5)
A 		42.7
(3)
A 		7.1
(-3)
A 		36
C 5.6
(-2.9)
A 		4.2
(-3)
A 		21.7
(-1.7)
A 		86.2
(3)
A 		82
avr 10.9
(-3) 		24.1
(-0.9) 		23
(-1.1) 		48.7
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 6.1
(-2.3)
A 		4.8
(-2.9)
A 		16.6
(3)
A 		4.7
(-3)
A 		12.4
(0.9)
A 		5.8
(-2.4)
A 		12
B 5.1
(-2.8)
A 		6.9
(-2.2)
A 		7.3
(-2.1)
A 		11.2
(-0.9)
A 		23.6
(3)
A 		4.4
(-3)
A 		19
C 3.5
(-2.9)
A 		62.9
(3)
A 		4.7
(-2.8)
A 		6.7
(-2.6)
A 		3
(-3)
A 		28.5
(-0.4)
A 		60
avr 4.9
(-3) 		24.9
(3) 		9.5
(-1.6) 		7.5
(-2.2) 		13
(-0.6) 		12.9
(-0.6) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.2
(-3)
A 		6.2
(1.6)
A 		1.2
(-3)
A 		7.7
(3)
A 		7
B 7.7
(1.4)
A 		9.8
(2.9)
A 		9.9
(3)
A 		1.5
(-3)
A 		8
C 1.9
(-2.7)
A 		1.2
(-3)
A 		7.6
(-0.1)
A 		14.5
(3)
A 		13
avr 3.6
(-3) 		5.7
(-0.1) 		6.2
(0.6) 		7.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.7
(-1.6)
A 		3.6
(2.8)
A 		1.2
(-2.8)
A 		3.7
(3)
A 		1.4
(-2.3)
A 		3
B 1.8
(-2.9)
A 		2.3
(-2.5)
A 		1.8
(-2.9)
A 		3
(-2)
A 		9.6
(3)
A 		1.7
(-3)
A 		8
C 1.3
(-2.9)
A 		19.2
(3)
A 		1.2
(-2.9)
A 		1.3
(-2.9)
A 		1
(-3)
A 		9.5
(-0.2)
A 		18
avr 1.4
(-3) 		7.7
(3) 		2.2
(-2.2) 		1.8
(-2.6) 		4.8
(0.2) 		4.2
(-0.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188827_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16056
Sequence Type Exemplar sequence
Representative Public ID C05A9.3 NCBI
Target Description C05A9.3 /REP_DB=WormBase Gene ID /WP=CE05223 /TR=Q17643 /GB=CAA94200.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ankyrin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077407(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077407 NCBI Caenorhabditis elegans C05A9.3 (C05A9.3) mRNA, complete cds. 11/11 None
GENEFINDER00000001261 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10827273:10833970:-1 11/11 None
C05A9.3 ENSEMBL cdna:known chromosome:CEL140:X:10827273:10833970:-1 gene:C05A9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001253 3/11 Cross Hyb Matching Probes None
SNAP00000001254 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10827272-10833970(-) 100.0 100.0
Public Domain and Genome References
Gene Title ankyrin like
Ensembl C05A9.3
Entrez Gene 182244 Entrez gene
SwissProt Q17643 EMBL-EBI
WormBase CE05223 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94200 Hypothetical protein C05A9.3 [Caenorhabditis elegans] ref|NP_509808.1| C05A9.3 [Caenorhabditis elegans] 0.0
blast CAE70814 Hypothetical protein CBG17583 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 4.6E-4
Pfam IPR002110 EMBL-EBI Ankyrin 2.1E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-4
Pfam IPR002110 EMBL-EBI Ankyrin 4.6E-4
Pfam IPR002110 EMBL-EBI Ankyrin 2.1E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-4
Sequence
Target Sequence 
>C. ELEGANS:188827_AT
acgttgcacatggctgtggctcataaacaacgagatatagtggaacttttgcttaaaaac
ggctacgatcccaatactcccgcatcgtgtcactgtaagggaaattgcacggcgactggg
aatattccactgacttcgatcattccgagaactcattcaatgacgccagaattgtgttcg
acgtgctctcaactgagggttgtgtcaatcgtggatcaaacaccgcttggtgtggcagtc
agatcacagtccagcgaattgatagcattgttgattgcctacggaggagatgttaattta
ggtgatgaagatggcaacacgccgttgatgctagccgtacgagaatcacctctgtcttgg
ccttgcctgcacacgctcattttctttggagctcaaattgaacaaaagaacatgcgcgga
atatgccctcttgatcttgctccagagctgaagaaacttcaacaaacttgcgttgaagag
cttttcaaaaatgcgtgctcgggtgattgtgaaccaccatctcgatcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTTGCACATGGCTGTGGCTCATA 549 93 550 Antisense
CTCCCGCATCGTGTCACTGTAAGGG 504 233 626 Antisense
ATTCCACTGACTTCGATCATTCCGA 673 7 673 Antisense
CAGAATTGTGTTCGACGTGCTCTCA 76 205 716 Antisense
CACCGCTTGGTGTGGCAGTCAGATC 325 199 770 Antisense
CAGTCAGATCACAGTCCAGCGAATT 402 207 785 Antisense
TGGCAACACGCCGTTGATGCTAGCC 62 547 861 Antisense
AGCCGTACGAGAATCACCTCTGTCT 308 83 882 Antisense
CCTCTTGATCTTGCTCCAGAGCTGA 642 267 976 Antisense
AATGCGTGCTCGGGTGATTGTGAAC 297 167 1039 Antisense
GATTGTGAACCACCATCTCGATCTA 602 433 1054 Antisense
Sequence Source Affymetrix Proprietary Database