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[188826_at] 7TM receptor

Description T23D5.1 /REP_DB=WormBase Gene ID /WP=CE16443 /TR=O45803 /GB=CAB04815.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 64      4grp_total > 11      6grp_cgc > 56      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 10.1
(-3)
A 		16.9
(-2.1)
A 		14.7
(-2.4)
A 		53.7
(3)
A 		44
B 28.2
(-1.7)
A 		27.5
(-1.7)
A 		3.1
(-3)
A 		118.1
(3)
P 		115
C 13.5
(-2.4)
A 		26.3
(-1.7)
A 		3.3
(-3)
A 		111.2
(3)
M 		108
avr 17.3
(-2.3) 		23.6
(-1.9) 		7
(-3) 		94.3
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 14.3
(-2.1)
A 		11.5
(-2.5)
A 		42.9
(2.4)
A 		27.8
(0)
A 		46.8
(3)
A 		8.2
(-3)
A 		39
B 18.1
(-1.3)
A 		10
(-2.2)
A 		57.1
(3)
A 		3.2
(-3)
A 		12
(-2)
A 		35.3
(0.6)
A 		54
C 10.9
(-2)
A 		8.7
(-2.3)
A 		12.5
(-1.8)
A 		25.5
(-0.1)
A 		3.2
(-3)
A 		49.8
(3)
A 		47
avr 14.4
(-2.1) 		10.1
(-3) 		37.5
(3) 		18.8
(-1.1) 		20.7
(-0.7) 		31.1
(1.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 3.7
(-3)
A 		3.7
(-3)
A 		3.8
(-2.9)
A 		7.9
(3)
A 		4
B 9
(-1)
A 		6.8
(-1.5)
A 		0.7
(-3)
A 		25.2
(3)
P 		25
C 4.5
(-1.9)
A 		7.6
(-0.8)
A 		1.2
(-3)
A 		18.8
(3)
M 		18
avr 5.7
(-1.5) 		6
(-1.4) 		1.9
(-3) 		17.3
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.6
(-2.7)
A 		4.1
(-2)
A 		9.3
(0.6)
A 		7.1
(-0.5)
A 		14.1
(3)
A 		2
(-3)
A 		12
B 6.3
(-0.5)
A 		3.3
(-1.9)
A 		13.9
(3)
A 		0.9
(-3)
A 		4.9
(-1.2)
A 		13.2
(2.7)
A 		13
C 4
(-1.9)
A 		2.7
(-2.4)
A 		3.2
(-2.2)
A 		5.1
(-1.4)
A 		1
(-3)
A 		16.7
(3)
A 		16
avr 4.3
(-2.3) 		3.4
(-3) 		8.8
(1.5) 		4.4
(-2.2) 		6.7
(-0.3) 		10.6
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188826_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13450
Sequence Type Exemplar sequence
Representative Public ID T23D5.1 NCBI
Target Description T23D5.1 /REP_DB=WormBase Gene ID /WP=CE16443 /TR=O45803 /GB=CAB04815.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074517 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-27) (str-27) mRNA, complete cds. 11/11 None
SNAP00000041584 ENSEMBL cdna:SNAP chromosome:CEL140:V:15736607:15737255:-1 10/11 None
GENEFINDER00000041600 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15736607:15742243:-1 11/11 None
T23D5.1 ENSEMBL cdna:known chromosome:CEL140:V:15736607:15738404:-1 gene:T23D5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041585 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15736606-15738404(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-27
Ensembl T23D5.1
Entrez Gene 188782 Entrez gene
SwissProt O45803 EMBL-EBI
WormBase CE16443 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04815 Hypothetical protein T23D5.1 [Caenorhabditis elegans] ref|NP_506918.1| Seven TM Receptor family member (str-27) [Caenorhabditis elegans] 0.0
blast CAB04815 Hypothetical protein T23D5.1 [Caenorhabditis elegans] ref|NP_506918.1| Seven TM Receptor family member (str-27) [Caenorhabditis elegans] 1.0E-179
blast CAB04815 Hypothetical protein T23D5.1 [Caenorhabditis elegans] ref|NP_506918.1| Seven TM Receptor family member (str-27) [Caenorhabditis elegans] 3.0E-82
blast CAB04817 Hypothetical protein T23D5.6 [Caenorhabditis elegans] ref|NP_506919.1| Seven TM Receptor family member (str-18) [Caenorhabditis elegans] 2.0E-73
blast CAB04818 Hypothetical protein T23D5.7 [Caenorhabditis elegans] ref|NP_506920.2| Seven TM Receptor family member (str-19) [Caenorhabditis elegans] 1.0E-68
blast CAE66310 Hypothetical protein CBG11560 [Caenorhabditis briggsae] 2.0E-60
blast AAG24080 Seven tm receptor protein 28 [Caenorhabditis elegans] ref|NP_504921.1| Seven TM Receptor family member (str-28) [Caenorhabditis elegans] 1.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.7E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.8E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506918.1 7 11-33,46-65,85-107,130-152,202-224,246-268,283-305
T23D5.1 7 11-33,46-65,85-107,130-152,202-224,246-268,283-305
SNAP00000041584 3 37-59,81-103,118-140
GENEFINDER00000041600 12 12-34,44-66,87-109,129-151,209-231,265-287,300-322,342-364,387-409,459-481,503-525,540-562
Sequence
Target Sequence 
>C. ELEGANS:188826_AT
ggggagttatcacctatttttatgcgtacccggacgaatacgcaagggattatgtcagag
aggaaatgtacgaacagtataaagtggattcggacaaggttgcactctttgtactacttg
cgtatggtgaaaacaatggcacaaagtttgttcgtcctcaaagtttaatttgcatatttg
gacagatgggtatcatgagcctacagtacatgattatgatgatatgtggaattttgattt
acaaacagataaaagcagatctaaaggagaccacaatgatactgaacagcaaatttcaaa
agcaaatcttcaatgccttactgtaccaactagtcgctccatcacttctcgtccatcttc
cagcagttcccctattctttgctccattcttcgacatgaaattcagtttccgaactagag
ttgttgtctattttttcagtgtctaccctcttctagacagcctaattctgctcacagttg
tatccgactatagactagcagtcagaaaaattgtggccaacaaagcggttcagctggttg
caatgcttaatgtgggtacagtgaccccaacaaccgccactaatcaaacagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGAGTTATCACCTATTTTTATGC 379 497 443 Antisense
GGATTCGGACAAGGTTGCACTCTTT 357 509 528 Antisense
GTTGCACTCTTTGTACTACTTGCGT 317 439 541 Antisense
GGCACAAAGTTTGTTCGTCCTCAAA 23 527 580 Antisense
ATCTTCAATGCCTTACTGTACCAAC 672 31 748 Antisense
CTTTGCTCCATTCTTCGACATGAAA 516 223 819 Antisense
TCTAGACAGCCTAATTCTGCTCACA 273 615 894 Antisense
TTCTGCTCACAGTTGTATCCGACTA 569 691 908 Antisense
AGCGGTTCAGCTGGTTGCAATGCTT 520 81 966 Antisense
TGTGGGTACAGTGACCCCAACAACC 239 473 993 Antisense
CAACAACCGCCACTAATCAAACAGC 393 189 1010 Antisense
Sequence Source Affymetrix Proprietary Database