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[188824_at] histone H2A

Description ZK1251.1 /REP_DB=WormBase Gene ID /WP=CE03848 /TR=Q23429 /GB=CAA92497.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=histone H2A
Cluster 6grp_total > 98      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 70
(-1.4)
A 		37.7
(-3)
A 		55.9
(-2.1)
A 		157.7
(3)
P 		120
B 65.9
(0.4)
P 		72.6
(1.2)
A 		37.5
(-3)
A 		87.7
(3)
P 		50
C 63.9
(-0.8)
A 		6.1
(-3)
A 		22
(-2.4)
A 		160.5
(3)
P 		154
avr 66.6
(-1.3) 		38.8
(-3) 		38.5
(-3) 		135.3
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 546
1 2 3 4 5 6 range
A 80.2
(-2.6)
A 		48.1
(-3)
A 		64.2
(-2.8)
P 		105.8
(-2.4)
P 		390
(0.8)
P 		588.5
(3)
P 		540
B 70.9
(-2.6)
A 		43
(-3)
A 		67.8
(-2.6)
A 		73.1
(-2.5)
P 		382.3
(2.4)
P 		416.6
(3)
P 		374
C 50
(-3)
A 		75.9
(-2.7)
A 		76.8
(-2.7)
A 		140.8
(-2)
P 		372
(0.7)
P 		577.6
(3)
P 		528
avr 67
(-2.9) 		55.7
(-3) 		69.6
(-2.8) 		106.6
(-2.4) 		381.4
(1.1) 		527.6
(3) 		472
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 25.5
(3)
A 		8.2
(-3)
A 		14.6
(-0.8)
A 		23.1
(2.2)
P 		17
B 21
(3)
P 		17.9
(1.5)
A 		8.7
(-3)
A 		18.7
(1.9)
P 		12
C 21.2
(1.6)
A 		1.8
(-3)
A 		7.7
(-1.6)
A 		27.1
(3)
P 		25
avr 22.6
(2.8) 		9.3
(-3) 		10.3
(-2.6) 		23
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 14.8
(-3)
A 		17.1
(-2.9)
A 		14
(-3)
P 		26.8
(-2.4)
P 		117.7
(1.8)
P 		143.3
(3)
P 		129
B 24.7
(-2.6)
A 		14.3
(-3)
A 		16.5
(-2.9)
A 		19.4
(-2.8)
P 		155.3
(3)
P 		155.4
(3)
P 		141
C 18.5
(-3)
A 		23.2
(-2.8)
A 		19.6
(-3)
A 		28.3
(-2.7)
P 		120.4
(0.5)
P 		193.4
(3)
P 		175
avr 19.3
(-2.9) 		18.2
(-2.9) 		16.7
(-3) 		24.8
(-2.7) 		131.1
(1.7) 		164
(3) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188824_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8878
Sequence Type Exemplar sequence
Representative Public ID ZK1251.1 NCBI
Target Description ZK1251.1 /REP_DB=WormBase Gene ID /WP=CE03848 /TR=Q23429 /GB=CAA92497.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=histone H2A
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069317(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069317 NCBI Caenorhabditis elegans ZK1251.1 (ZK1251.1) mRNA, complete cds. 11/11 None
SNAP00000023381 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9682993:9683498:-1 11/11 None
GENEFINDER00000023393 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9682993:9683498:-1 11/11 None
ZK1251.1 ENSEMBL cdna:known chromosome:CEL140:IV:9682993:9683498:-1 gene:ZK1251.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9682998-9683504(-) 100.0 100.0
Public Domain and Genome References
Gene Title histone H2A
Ensembl ZK1251.1
Entrez Gene 191549 Entrez gene
SwissProt Q23429 EMBL-EBI
WormBase CE03848 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6334 nucleosome assembly inferred from electronic annotation QuickGO AmiGO
7001 chromosome organization and biogenesis (sensu Eukaryota) inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
786 nucleosome inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92497 Hypothetical protein ZK1251.1 [Caenorhabditis elegans] ref|NP_501718.1| ZK1251.1 [Caenorhabditis elegans] 1.0E-55
blast CAD38837 histone H2A.4 [Oikopleura dioica] 5.0E-22
blast XP_504426 hypothetical protein [Yarrowia lipolytica] emb|CAG80027.1| unnamed protein product [Yarrowia lipolytica CLIB99] 6.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR007125 EMBL-EBI Histone core 3.9E-30
Sequence
Target Sequence 
>C. ELEGANS:188824_AT
tacatcgacgaaaacatcatccgcgaagaaaaagaaaaagagaatcagccgctcgacacg
ttctggtttaacttttccagtcggaagaattcatcgaaaacttcgtgaaactactcgtgg
aaaacaaagaatttcagcaggtgcatctgtttttatggctgctacacttgaatatttaac
taccgaacttatggaaatgtctgcaatcgcggctaatgaaagtaagaaatcgagagtcac
gccacgtcatcttcatttggcaatttatggagatcaagaaaccgcacaactgcttgataa
ggttactctgcctcaaggaggagttacaccaatgcctattcatccatccttgcttccaaa
gaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACATCGACGAAAACATCATCCGCG 241 641 51 Antisense
AAAGAGAATCAGCCGCTCGACACGT 596 121 87 Antisense
GAATTTCAGCAGGTGCATCTGTTTT 547 325 179 Antisense
GCATCTGTTTTTATGGCTGCTACAC 362 309 193 Antisense
GCTACACTTGAATATTTAACTACCG 276 303 211 Antisense
GGAAATGTCTGCAATCGCGGCTAAT 281 527 243 Antisense
CACGTCATCTTCATTTGGCAATTTA 657 199 293 Antisense
GAGATCAAGAAACCGCACAACTGCT 355 397 320 Antisense
AAGGTTACTCTGCCTCAAGGAGGAG 511 159 349 Antisense
GAGTTACACCAATGCCTATTCATCC 343 397 371 Antisense
CATCCATCCTTGCTTCCAAAGAAGA 513 211 391 Antisense
Sequence Source Affymetrix Proprietary Database