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[188823_s_at] EGF-repeats

Description T25C12.3 /REP_DB=WormBase Gene ID /WP=CE18966 /TR=Q22774 /GB=CAA91487.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=EGF-repeats
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 12      4grp_highest_8_8 > 25      4grp_high_8_8 > 51      6grp_highest_nonorm > 15      6grp_total > 23      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6245
1 2 3 4 range
A 8024.3
(2.2)
P 		7743
(1.9)
P 		8853.4
(3)
P 		2742.9
(-3)
P 		6111
B 7518.8
(3)
P 		7328.5
(2.7)
P 		6967
(2.3)
P 		3088.1
(-3)
P 		4431
C 7170.3
(2.9)
P 		6997.3
(2.7)
P 		7238
(3)
P 		2608.4
(-3)
P 		4630
avr 7571.1
(2.9) 		7356.3
(2.6) 		7686.1
(3) 		2813.1
(-3) 		4873

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4353
1 2 3 4 5 6 range
A 7460.9
(3)
P 		6766.1
(1.9)
P 		5882.2
(0.6)
P 		4303.9
(-1.8)
P 		4277
(-1.9)
P 		3525.4
(-3)
P 		3936
B 6423
(1.8)
P 		7213.4
(3)
P 		6354.9
(1.7)
P 		5335.3
(0.3)
P 		3108
(-3)
P 		3625.2
(-2.2)
P 		4105
C 5901.1
(1)
P 		6988.8
(2.6)
P 		7247.2
(3)
P 		4105.6
(-1.7)
P 		3742.9
(-2.3)
P 		3278.4
(-3)
P 		3969
avr 6595
(2.3) 		6989.4
(3) 		6494.8
(2.2) 		4581.6
(-1.1) 		3709.3
(-2.6) 		3476.3
(-3) 		3513
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2520
1 2 3 4 range
A 2921.6
(3)
P 		1680.8
(0)
P 		2314.4
(1.6)
P 		401.5
(-3)
P 		2520
B 2397.7
(3)
P 		1810
(1)
P 		1614.4
(0.3)
P 		658.1
(-3)
P 		1740
C 2373.6
(2.6)
P 		2011.8
(1.5)
P 		2522.7
(3)
P 		439.8
(-3)
P 		2083
avr 2564.3
(3) 		1834.2
(0.9) 		2150.5
(1.8) 		499.8
(-3) 		2065

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1581
1 2 3 4 5 6 range
A 1375.3
(-1)
P 		2406.4
(3)
P 		1281
(-1.4)
P 		1091.6
(-2.1)
P 		1290.6
(-1.3)
P 		858.3
(-3)
P 		1548
B 2234.9
(2.1)
P 		2401
(3)
P 		1543.2
(-1.5)
P 		1413.1
(-2.2)
P 		1262.7
(-3)
P 		1351.8
(-2.5)
P 		1138
C 2187.3
(3)
P 		2132.5
(2.8)
P 		1844.5
(1.5)
P 		825.6
(-3)
P 		1211.2
(-1.3)
P 		1097.5
(-1.8)
P 		1362
avr 1932.5
(1.1) 		2313.3
(3) 		1556.2
(-0.8) 		1110.1
(-3) 		1254.8
(-2.2) 		1102.5
(-3) 		1211
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188823_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17284
Sequence Type Exemplar sequence
Representative Public ID T25C12.3 NCBI
Target Description T25C12.3 /REP_DB=WormBase Gene ID /WP=CE18966 /TR=Q22774 /GB=CAA91487.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=EGF-repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077518(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077518 NCBI Caenorhabditis elegans T25C12.3 (EGF-repeats) mRNA, complete cds. 11/11 None
T25C12.3.2 ENSEMBL cdna:known chromosome:CEL140:X:11490926:11499457:-1 gene:T25C12.3 11/11 None
T25C12.3.1 ENSEMBL cdna:known chromosome:CEL140:X:11491021:11499620:-1 gene:T25C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11491086-11499457(-) 100.0 100.0
Public Domain and Genome References
Gene Title EGF-repeats
Ensembl T25C12.3
Entrez Gene 259727 Entrez gene
SwissProt Q22774 EMBL-EBI
WormBase CE18966 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01757 Hypothetical protein T25C12.3 [Caenorhabditis elegans] emb|CAA91487.1| Hypothetical protein T25C12.3 [Caenorhabditis elegans] emb|CAB07849.1| Hypothetical protein T25C12.3 [Caenorhabditis elegans] ref|NP_509919.1| T25C12.3 [Caenorhabditis elegans] 0.0
blast CAE70629 Hypothetical protein CBG17315 [Caenorhabditis briggsae] 0.0
blast AAA83584 Hypothetical protein F28B4.3 [Caenorhabditis elegans] ref|NP_508551.1| F28B4.3 [Caenorhabditis elegans] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.9E-4
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 1.6E-8
Sequence
Target Sequence 
>C. ELEGANS:188823_S_AT
ccaccaccagcaacctgtgatttgaacgttgtaaaacaagacacacttttcctcattgac
agttctctcaaggattctaacgttacattcagaattctccaacaatttgctgttcaagct
gtacaaccgttcaattatgttagcggattgggtcaagtcgctgctctgagggttgctgac
aaggcttatggagggttctcatacaatgctggcgaaaattcgtttgatcgagtttctgaa
cttatttacaacatgcaatatattggaattgatggccaaaatgtcacagctgggcttcaa
tacgcgttagattactatgatctgccgtcgcagggttatagaactggttcagatgttcga
catcttcttgtctacgttacccagaccaacccaaccgatgccgatccctcagaacttctt
cgaactatcaaacgctcaggattatacgaagttgttgtagttgctctcgacatgcagcca
tctgacaagttgaccaatatggtcaacccaagatgcttctacttagctcaggacttccat
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCACCAGCAACCTGTGATTTGA 671 273 5446 Antisense
GACACACTTTTCCTCATTGACAGTT 95 367 5485 Antisense
GCGGATTGGGTCAAGTCGCTGCTCT 151 293 5588 Antisense
TCGCTGCTCTGAGGGTTGCTGACAA 523 599 5603 Antisense
TACTATGATCTGCCGTCGCAGGGTT 616 643 5758 Antisense
CGACATCTTCTTGTCTACGTTACCC 445 249 5803 Antisense
ATCCCTCAGAACTTCTTCGAACTAT 100 39 5849 Antisense
GTTGTTGTAGTTGCTCTCGACATGC 566 437 5896 Antisense
CTCTCGACATGCAGCCATCTGACAA 477 231 5909 Antisense
TGGTCAACCCAAGATGCTTCTACTT 161 553 5945 Antisense
TTCTACTTAGCTCAGGACTTCCATG 88 689 5962 Antisense
Sequence Source Affymetrix Proprietary Database