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[188822_at]

Description C55B7.4 /REP_DB=WormBase Gene ID /WP=CE09015 /GB=AAK68275.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=acyl-CoA dehydrogenase
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 72      6grp_highest_nonorm > 90      6grp_total > 73      4grp_total > 56      6grp_highest_sub > 03_04      6grp_cgc > 75      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 844
1 2 3 4 range
A 31.7
(-2.9)
A 		14.7
(-3)
A 		707.2
(3)
P 		125.9
(-2)
A 		693
B 35.8
(-3)
A 		32
(-3)
A 		724.3
(3)
P 		62.5
(-2.7)
A 		692
C 47.9
(-3)
A 		61.7
(-2.9)
A 		859
(3)
P 		129.8
(-2.4)
A 		811
avr 38.5
(-3) 		36.1
(-3) 		763.5
(3) 		106.1
(-2.4) 		727

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 76.8
(-3)
P 		115
(-0.9)
P 		137.4
(0.3)
P 		186.6
(3)
P 		94.1
(-2.1)
P 		110.5
(-1.2)
P 		110
B 66.3
(-3)
P 		127.4
(1.7)
P 		145.1
(3)
P 		115.8
(0.8)
P 		133.3
(2.1)
P 		126.6
(1.6)
P 		79
C 71.2
(-3)
P 		145.8
(1.9)
P 		126.6
(0.7)
P 		162.1
(3)
P 		88.4
(-1.9)
P 		98.5
(-1.2)
P 		91
avr 71.4
(-3) 		129.4
(1.2) 		136.4
(1.7) 		154.8
(3) 		105.3
(-0.6) 		111.9
(-0.1) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 11.5
(-2.7)
A 		3.2
(-3)
A 		184.9
(3)
P 		18.4
(-2.5)
A 		182
B 11.4
(-2.9)
A 		7.9
(-3)
A 		167.8
(3)
P 		13.3
(-2.8)
A 		160
C 15.8
(-3)
A 		17.8
(-3)
A 		299.4
(3)
P 		21.9
(-2.9)
A 		284
avr 12.9
(-2.9) 		9.6
(-3) 		217.4
(3) 		17.9
(-2.8) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 14.2
(-3)
P 		40.9
(1.8)
P 		29.9
(-0.2)
P 		47.3
(3)
P 		28.4
(-0.4)
P 		26.9
(-0.7)
P 		33
B 23.1
(-3)
P 		42.4
(0.7)
P 		35.2
(-0.7)
P 		30.7
(-1.5)
P 		54.1
(3)
P 		47.2
(1.7)
P 		31
C 26.4
(-3)
P 		44.5
(3)
P 		32.2
(-1.1)
P 		32.6
(-0.9)
P 		28.6
(-2.3)
P 		33
(-0.8)
P 		18
avr 21.2
(-3) 		42.6
(3) 		32.4
(0.1) 		36.9
(1.4) 		37
(1.4) 		35.7
(1.1) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188822_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1931
Sequence Type Exemplar sequence
Representative Public ID C55B7.4 NCBI
Target Description C55B7.4 /REP_DB=WormBase Gene ID /WP=CE09015 /GB=AAK68275.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=acyl-CoA dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059470(11), NM_181994(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059470 NCBI Caenorhabditis elegans Acyl CoA DeHydrogenase family member (acdh-1) (acdh-1) mRNA, complete cds. 11/11 None
NM_181994 NCBI Caenorhabditis elegans Acyl CoA DeHydrogenase family member (acdh-1) (acdh-1) mRNA, complete cds. 11/11 None
SNAP00000038301 ENSEMBL cdna:SNAP chromosome:CEL140:I:6505588:6509495:1 11/11 None
GENEFINDER00000038314 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6505588:6509495:1 11/11 None
C55B7.4a ENSEMBL cdna:known chromosome:CEL140:I:6505123:6507687:1 gene:C55B7.4 11/11 None
C55B7.4b.3 ENSEMBL cdna:known chromosome:CEL140:I:6505573:6507600:1 gene:C55B7.4 11/11 None
C55B7.4b.2 ENSEMBL cdna:known chromosome:CEL140:I:6505573:6507600:1 gene:C55B7.4 11/11 None
C55B7.4b.1 ENSEMBL cdna:known chromosome:CEL140:I:6505604:6507687:1 gene:C55B7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
C55B7.4b.4 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6505516-6507528(+) 100.0 100.0
Public Domain and Genome References
Ensembl C55B7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491871 Acyl CoA DeHydrogenase family member (acdh-1) [Caenorhabditis elegans] gb|AAK68275.1| Acyl coa dehydrogenase protein 1, isoform a [Caenorhabditis elegans] 0.0
blast CAE67208 Hypothetical protein CBG12644 [Caenorhabditis briggsae] 0.0
blast NP_491872 C55B7.3 [Caenorhabditis elegans] gb|AAK68274.1| Hypothetical protein C55B7.3 [Caenorhabditis elegans] 0.0
blast CAB02287 Hypothetical protein F10G8.1 [Caenorhabditis elegans] ref|NP_492647.2| F10G8.1 [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec ACDM_HUMAN (P11310) Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 1.0E-142
ec ACDM_HUMAN (P11310) Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 1.0E-163
ec ACDM_HUMAN (P11310) Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 1.0E-164
ec ACDL_HUMAN (P28330) Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (LCAD) 2.0E-99
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 0.730000019073486
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 0.670000016689301
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 3.1E-68
Pfam IPR006091 EMBL-EBI Acyl-CoA dehydrogenase, central domain 1.0E-48
Pfam IPR006092 EMBL-EBI Acyl-CoA dehydrogenase, N-terminal 6.3E-30
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 1.7E-22
Pfam IPR006091 EMBL-EBI Acyl-CoA dehydrogenase, central domain 1.0E-48
Pfam IPR006092 EMBL-EBI Acyl-CoA dehydrogenase, N-terminal 5.3E-21
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.4E-100
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 1.7E-43
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.4E-100
Sequence
Target Sequence 
>C. ELEGANS:188822_AT
gatcagcggatggtcttactgtagataaggaggaagacaaacttggaatccgagcttcat
ccacttgtcaagttcattttgacaatgttcgtgtccacaaatcagcaattctgggagagt
atggaaaaggctacaaatacgcaattgaatgcctaaatgcaggtagaattgccattggag
cacaaatgattggactggctcagggttgtttcgatcaaacaattccatatcttcaacaga
gagaacagttcggtcagagacttattgattttcagggtttacaacatcagattgcacaag
ctagaactgaaattgaggccgcacgtctactagtgtataatgctgcccgtatgaaagaat
atggaataccatatgtacgagaagctgcaatggcgaaactgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAGCGGATGGTCTTACTGTAGA 21 421 701 Antisense
CAAACTTGGAATCCGAGCTTCATCC 615 189 738 Antisense
GAGCTTCATCCACTTGTCAAGTTCA 178 389 752 Antisense
GTTCGTGTCCACAAATCAGCAATTC 180 443 787 Antisense
GCAGGTAGAATTGCCATTGGAGCAC 461 311 859 Antisense
TGGACTGGCTCAGGGTTGTTTCGAT 514 545 891 Antisense
GAACAGTTCGGTCAGAGACTTATTG 365 315 943 Antisense
GAACTGAAATTGAGGCCGCACGTCT 552 347 1004 Antisense
AGGCCGCACGTCTACTAGTGTATAA 515 53 1016 Antisense
TAGTGTATAATGCTGCCCGTATGAA 294 653 1031 Antisense
GAGAAGCTGCAATGGCGAAACTGTT 46 393 1079 Antisense
Sequence Source Affymetrix Proprietary Database