[Home] | [Total List]

[188821_at]

Description ZK867.1 /REP_DB=WormBase Gene ID /WP=CE05119 /CHR=X /FEA=Sanger Annotation /DEF=zinc finger (ST.LOUIS) TR:Q23654 protein_id:AAA82395.1
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 03      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 51      6grp_total > 15      4grp_total > 37      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 542
1 2 3 4 range
A 842.3
(3)
P 		690.8
(1.3)
P 		315.2
(-3)
P 		569.6
(-0.1)
P 		527
B 857.2
(3)
P 		571.7
(-0.7)
P 		397
(-3)
P 		515.8
(-1.5)
P 		460
C 755.6
(3)
P 		578.5
(-0)
P 		403.5
(-3)
P 		472.5
(-1.8)
P 		352
avr 818.4
(3) 		613.7
(0.2) 		371.9
(-3) 		519.3
(-1) 		447

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 524
1 2 3 4 5 6 range
A 679.7
(2.3)
P 		726.9
(3)
P 		349.2
(-3)
P 		412.4
(-2)
P 		418.3
(-1.9)
P 		390.3
(-2.3)
P 		378
B 787.5
(3)
P 		561.8
(-0.1)
P 		606.5
(0.5)
P 		523.3
(-0.7)
P 		354.3
(-3)
P 		384.9
(-2.6)
P 		433
C 802.8
(3)
P 		672.5
(1.5)
P 		567.5
(0.3)
P 		485.4
(-0.6)
P 		328.4
(-2.4)
P 		279
(-3)
P 		524
avr 756.7
(3) 		653.7
(1.5) 		507.7
(-0.7) 		473.7
(-1.2) 		367
(-2.8) 		351.4
(-3) 		405
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 306.7
(3)
P 		150
(-1.2)
P 		82.4
(-3)
P 		83.4
(-3)
P 		224
B 273.3
(3)
P 		141.2
(-1.4)
P 		92
(-3)
P 		109.9
(-2.4)
P 		181
C 250.1
(3)
P 		166.3
(0)
P 		140.6
(-0.9)
P 		79.7
(-3)
P 		170
avr 276.7
(3) 		152.5
(-1) 		105
(-2.5) 		91
(-3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 125.3
(-1.4)
P 		258.5
(3)
P 		76
(-3)
P 		104.6
(-2.1)
P 		126.2
(-1.3)
P 		95
(-2.4)
P 		183
B 274
(3)
P 		187
(-0.9)
P 		147.3
(-2.6)
P 		138.6
(-3)
P 		144
(-2.8)
P 		143.5
(-2.8)
P 		135
C 297.6
(3)
P 		205.2
(0.3)
P 		144.4
(-1.5)
P 		97.6
(-2.9)
P 		106.3
(-2.6)
P 		93.4
(-3)
P 		204
avr 232.3
(3) 		216.9
(2.2) 		122.6
(-2.4) 		113.6
(-2.9) 		125.5
(-2.3) 		110.6
(-3) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188821_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16085
Sequence Type Exemplar sequence
Representative Public ID ZK867.1 NCBI
Target Description ZK867.1 /REP_DB=WormBase Gene ID /WP=CE05119 /CHR=X /FEA=Sanger Annotation /DEF=zinc finger (ST.LOUIS) TR:Q23654 protein_id:AAA82395.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076813(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076813 NCBI Caenorhabditis elegans ZK867.1c (ZK867.1) mRNA, complete cds. 11/11 None
GENEFINDER00000032298 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7216624:7226171:1 11/11 None
SNAP00000032295 ENSEMBL cdna:SNAP chromosome:CEL140:X:7225410:7225993:1 9/11 None
ZK867.1c ENSEMBL cdna:known chromosome:CEL140:X:7218057:7226765:1 gene:ZK867.1 11/11 None
ZK867.1b ENSEMBL cdna:known chromosome:CEL140:X:7218275:7226765:1 gene:ZK867.1 10/11 None
ZK867.1d ENSEMBL cdna:known chromosome:CEL140:X:7218416:7226765:1 gene:ZK867.1 10/11 None
ZK867.1a ENSEMBL cdna:known chromosome:CEL140:X:7220659:7226765:1 gene:ZK867.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076815 6/11 Cross Hyb Matching Probes None
NM_076812 6/11 Cross Hyb Matching Probes None
NM_076814 6/11 Cross Hyb Matching Probes None
SNAP00000032294 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180985 4 1 NM_076813 188821_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7220919-7225992(+) 99.39 99.39
Public Domain and Genome References
Ensembl ZK867.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68627 Hypothetical protein ZK867.1c [Caenorhabditis elegans] ref|NP_509214.2| ZK867.1c [Caenorhabditis elegans] 0.0
blast T28067 hypothetical protein ZK867.1 - Caenorhabditis elegans 0.0
blast AAL11489 Hypothetical protein ZK867.1d [Caenorhabditis elegans] ref|NP_509213.1| ZK867.1d [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.9E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.9E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.9E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.9E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-5
Sequence
Target Sequence 
>C. ELEGANS:188821_AT
tcaagtggtgactcgtgtccatctccaccgaagatgcttcattgcaaggaatgtggaacg
cttgttaggaagagttctcatctcccgattcatatgacaatgagccatggttatccacct
ccacttgtagcagctccagttgaagagaagccagctccagaacaaccggtcaatgctagt
tctcttcataatgaactccgagtcatctcaaatgccatctgtgagctcaaggcccaacaa
gcagctactccaagagttgagcaggcactaacgtatattgactcccgtgttggtaaactt
gagaggagcttggagactgcattaaactccatctacacccttgtgcaacttcaaaccgga
atgacgagcagtgtgaatcgattacgtgaagattcgacaaagaacttctccgacttgaaa
acaagaatggaaatgtcgctgtcaccaattaaaccattccagcagcggttctcaagagaa
cgatcgtcgtcgagctcagtaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGTGGTGACTCGTGTCCATCTC 164 633 955 Antisense
TAGGAAGAGTTCTCATCTCCCGATT 472 655 1020 Antisense
CAATGAGCCATGGTTATCCACCTCC 258 183 1052 Antisense
CTCCACTTGTAGCAGCTCCAGTTGA 197 235 1073 Antisense
AACCGGTCAATGCTAGTTCTCTTCA 340 147 1118 Antisense
GAACTCCGAGTCATCTCAAATGCCA 200 349 1147 Antisense
GCCATCTGTGAGCTCAAGGCCCAAC 510 281 1168 Antisense
CATCTACACCCTTGTGCAACTTCAA 98 213 1284 Antisense
GTCGCTGTCACCAATTAAACCATTC 508 475 1389 Antisense
CCATTCCAGCAGCGGTTCTCAAGAG 5 271 1408 Antisense
AACGATCGTCGTCGAGCTCAGTAGA 293 145 1433 Antisense
Sequence Source Affymetrix Proprietary Database