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[188820_s_at]

Description H24K24.3 /REP_DB=WormBase Gene ID /WP=CE23822 /GB=AAF39899.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 42      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 33      6grp_total > 52      4grp_total > 48      6grp_highest_sub > 03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 669
1 2 3 4 range
A 1243.8
(-3)
P 		1607.8
(1.1)
P 		1771.3
(3)
P 		1261.8
(-2.8)
P 		528
B 1342.4
(-1.4)
P 		1333.1
(-1.6)
P 		1584.3
(3)
P 		1257.9
(-3)
P 		326
C 1102.2
(-3)
P 		1298.3
(0.7)
P 		1421.3
(3)
P 		1141.8
(-2.3)
P 		319
avr 1229.5
(-2.9) 		1413.1
(0.1) 		1592.3
(3) 		1220.5
(-3) 		372

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1253
1 2 3 4 5 6 range
A 1428.8
(-2.4)
P 		1763.4
(0.9)
P 		1980.4
(3)
P 		1798.4
(1.2)
P 		1670.6
(-0)
P 		1362
(-3)
P 		618
B 1480.3
(-2.2)
P 		1803
(-0.2)
P 		2332.6
(3)
P 		1719
(-0.7)
P 		1820.8
(-0.1)
P 		1343.7
(-3)
P 		989
C 1688.1
(1.2)
P 		1877.4
(2.5)
P 		1945
(3)
P 		1407.8
(-0.7)
P 		1947.7
(3)
P 		1079.8
(-3)
P 		868
avr 1532.4
(-1) 		1814.6
(1) 		2086
(3) 		1641.7
(-0.2) 		1813
(1) 		1261.8
(-3) 		824
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 452.9
(2.8)
P 		349
(0.5)
P 		463.1
(3)
P 		184.7
(-3)
P 		278
B 428.1
(3)
P 		329.2
(-0.7)
P 		367.1
(0.7)
P 		268.1
(-3)
P 		160
C 364.8
(0.4)
P 		373.3
(0.6)
P 		495.4
(3)
P 		192.5
(-3)
P 		303
avr 415.3
(2.3) 		350.5
(0.6) 		441.9
(3) 		215.1
(-3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 476
1 2 3 4 5 6 range
A 263.4
(-3)
P 		627.1
(3)
P 		431.3
(-0.2)
P 		456.1
(0.2)
P 		504.1
(1)
P 		331.6
(-1.9)
P 		364
B 515.1
(-1.7)
P 		600.1
(0.1)
P 		566.4
(-0.7)
P 		455.3
(-3)
P 		739.8
(3)
P 		501
(-2)
P 		285
C 625.7
(2.9)
P 		572.9
(2)
P 		495
(0.7)
P 		283.1
(-3)
P 		630.2
(3)
P 		361.5
(-1.6)
P 		347
avr 468.1
(-1.1) 		600
(2.3) 		497.6
(-0.4) 		398.2
(-3) 		624.7
(3) 		398
(-3) 		227
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188820_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15291
Sequence Type Exemplar sequence
Representative Public ID H24K24.3 NCBI
Target Description H24K24.3 /REP_DB=WormBase Gene ID /WP=CE23822 /GB=AAF39899.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171434(11), NM_001028845(11), NM_070956(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171434 NCBI Caenorhabditis elegans H24K24.3a (H24K24.3) mRNA, complete cds. 11/11 A 
NM_001028845 NCBI Caenorhabditis elegans H24K24.3b (H24K24.3) mRNA, complete cds. 11/11 None
NM_070956 NCBI Caenorhabditis elegans Y50D4C.2 (Y50D4C.2) mRNA, complete cds. 11/11 A 
SNAP00000006371 ENSEMBL cdna:SNAP chromosome:CEL140:V:911638:919825:1 11/11 None
GENEFINDER00000006376 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:904798:915977:1 11/11 None
SNAP00000044731 ENSEMBL cdna:SNAP chromosome:CEL140:V:936294:973311:1 11/11 None
GENEFINDER00000044745 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:936294:939058:1 11/11 None
H24K24.3a ENSEMBL cdna:known chromosome:CEL140:V:911601:916144:1 gene:H24K24.3 11/11 A 
H24K24.3b.1 ENSEMBL cdna:known chromosome:CEL140:V:911622:916136:1 gene:H24K24.3 11/11 A 
H24K24.3b.2 ENSEMBL cdna:known chromosome:CEL140:V:911638:916456:1 gene:H24K24.3 11/11 A 
H24K24.3c ENSEMBL cdna:known chromosome:CEL140:V:914569:915977:1 gene:H24K24.3 10/11 A 
Y50D4C.2 ENSEMBL cdna:known chromosome:CEL140:V:936228:939197:1 gene:Y50D4C.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:911637-915977(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H24K24.3
Y50D4C.2
Entrez Gene 178598 Entrez gene
SwissProt Q965R0 EMBL-EBI
WormBase CE22292 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4024 alcohol dehydrogenase activity, zinc-dependent inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39899 Hypothetical protein H24K24.3a [Caenorhabditis elegans] ref|NP_741507.1| H24K24.3a [Caenorhabditis elegans] sp|Q17335|ADHX_CAEEL Alcohol dehydrogenase class III (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) gb|AAB03374.1| alcohol dehydrogenase 0.0
blast AAL32231 Hypothetical protein H24K24.3b [Caenorhabditis elegans] ref|NP_001024016.1| H24K24.3b [Caenorhabditis elegans] 0.0
blast CAE71050 Hypothetical protein CBG17892 [Caenorhabditis briggsae] 0.0
blast AAK68507 Hypothetical protein Y50D4C.2 [Caenorhabditis elegans] ref|NP_503357.1| Y50D4C.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.0E-126
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.0E-126
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.8E-46
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.039
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.0E-126
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.0E-126
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.9E-96
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.1E-23
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.3E-9
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.039
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.0E-126
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188820_S_AT
gaatttcaactggatacggagccgtgctgaacacgtgcaaagtggaagaagggagtactg
tagccgtatggggactcggtgcagtcggattggccgttatcatgggcgcaaaggctgccg
gagccaagaaaatcgtcggaatcgacctgatcgagtcgaaattcgagtcggccaaattct
tcggagccaccgaatgcatcaatccgaagagtgttgagcttcctgaggggaagagcttcc
aagcatggctcgtggagcaatttgacggaggatttgactacacttttgagtgtattggaa
atgtgcacacaatgcgccaagccctcgaagccgcccacaaaggatggggagtctcgtgta
tcatcggagtcgccggagccggccaagagatcgccacccgtccattccaacttgtcaccg
ggcgcacgtggaagggaaccgcattcggcggatggaaatccgtggaaagtgtgccgagac
tcgtcgacgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTTCAACTGGATACGGAGCCGT 702 323 545 Antisense
GTAGCCGTATGGGGACTCGGTGCAG 7 457 604 Antisense
ACTCGGTGCAGTCGGATTGGCCGTT 499 99 618 Antisense
GGATTGGCCGTTATCATGGGCGCAA 57 509 631 Antisense
TCATGGGCGCAAAGGCTGCCGGAGC 577 621 644 Antisense
GCTGCCGGAGCCAAGAAAATCGTCG 444 297 658 Antisense
GGATGGGGAGTCTCGTGTATCATCG 100 515 886 Antisense
GTGTATCATCGGAGTCGCCGGAGCC 567 483 900 Antisense
TCGCCGGAGCCGGCCAAGAGATCGC 376 599 914 Antisense
AGGGAACCGCATTCGGCGGATGGAA 260 57 977 Antisense
AGTGTGCCGAGACTCGTCGACGACT 321 59 1012 Antisense
Sequence Source Affymetrix Proprietary Database