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[188819_at]

Description H24K24.3 /REP_DB=WormBase Gene ID /WP=CE23822 /GB=AAF39899.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 31      4grp_highest_8_8 > 19      4grp_high_8_8 > 39      6grp_highest_nonorm > 75      6grp_total > 43      4grp_total > 40      6grp_highest_sub > De      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 676.5
(-3)
P 		784.4
(0.5)
P 		861.7
(3)
P 		717.2
(-1.7)
P 		185
B 706.2
(-3)
P 		716
(-2.8)
P 		1003.1
(3)
P 		963.1
(2.2)
P 		297
C 721.5
(-2.4)
P 		731.2
(-2.1)
P 		898.6
(3)
P 		702.8
(-3)
P 		196
avr 701.4
(-3) 		743.9
(-1.8) 		921.1
(3) 		794.4
(-0.5) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 663
1 2 3 4 5 6 range
A 882.3
(-1.4)
P 		871.7
(-1.5)
P 		1276.2
(3)
P 		815.5
(-2.1)
P 		792.3
(-2.4)
P 		734.5
(-3)
P 		542
B 1094
(1.2)
P 		1035.2
(0.2)
P 		1199.2
(3)
P 		895
(-2.2)
P 		1040.4
(0.3)
P 		851.2
(-3)
P 		348
C 1058.3
(2.3)
P 		1011.9
(1.7)
P 		870.9
(0.1)
P 		626.9
(-2.8)
P 		1119.1
(3)
P 		613
(-3)
P 		506
avr 1011.5
(1.4) 		972.9
(0.8) 		1115.4
(3) 		779.1
(-2.3) 		983.9
(0.9) 		732.9
(-3) 		383
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 246.3
(3)
P 		170.3
(-0.2)
P 		225.3
(2.1)
P 		105
(-3)
P 		141
B 225.2
(2.2)
P 		176.8
(-3)
P 		232.4
(3)
P 		205.2
(0.1)
P 		56
C 238.8
(0.7)
P 		210.2
(-0.2)
P 		313.2
(3)
P 		118.5
(-3)
P 		195
avr 236.8
(1.9) 		185.8
(-0.7) 		257
(3) 		142.9
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 162.6
(-3)
P 		310
(3)
P 		277.9
(1.7)
P 		206.8
(-1.2)
P 		239.1
(0.1)
P 		178.8
(-2.3)
P 		147
B 380.7
(1.6)
P 		344.6
(0.5)
P 		291.2
(-1.3)
P 		237.1
(-3)
P 		422.7
(3)
P 		317.4
(-0.4)
P 		186
C 392.3
(3)
P 		308.8
(1.1)
P 		221.7
(-0.8)
P 		126.1
(-3)
P 		362.1
(2.3)
P 		205.2
(-1.2)
P 		266
avr 311.9
(1.8) 		321.1
(2.2) 		263.6
(-0.1) 		190
(-3) 		341.3
(3) 		233.8
(-1.3) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188819_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15291
Sequence Type Exemplar sequence
Representative Public ID H24K24.3 NCBI
Target Description H24K24.3 /REP_DB=WormBase Gene ID /WP=CE23822 /GB=AAF39899.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171434(11), NM_001028845(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171434 NCBI Caenorhabditis elegans H24K24.3a (H24K24.3) mRNA, complete cds. 11/11 A 
NM_001028845 NCBI Caenorhabditis elegans H24K24.3b (H24K24.3) mRNA, complete cds. 11/11 None
SNAP00000006371 ENSEMBL cdna:SNAP chromosome:CEL140:V:911638:919825:1 10/11 None
GENEFINDER00000006376 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:904798:915977:1 11/11 None
H24K24.3a ENSEMBL cdna:known chromosome:CEL140:V:911601:916144:1 gene:H24K24.3 11/11 A 
H24K24.3b.1 ENSEMBL cdna:known chromosome:CEL140:V:911622:916136:1 gene:H24K24.3 11/11 A 
H24K24.3b.2 ENSEMBL cdna:known chromosome:CEL140:V:911638:916456:1 gene:H24K24.3 11/11 A 
H24K24.3c ENSEMBL cdna:known chromosome:CEL140:V:914569:915977:1 gene:H24K24.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:911637-915977(+) 100.0 100.0
Public Domain and Genome References
Ensembl H24K24.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39899 Hypothetical protein H24K24.3a [Caenorhabditis elegans] ref|NP_741507.1| H24K24.3a [Caenorhabditis elegans] sp|Q17335|ADHX_CAEEL Alcohol dehydrogenase class III (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) gb|AAB03374.1| alcohol dehydrogenase 0.0
blast AAL32231 Hypothetical protein H24K24.3b [Caenorhabditis elegans] ref|NP_001024016.1| H24K24.3b [Caenorhabditis elegans] 0.0
blast CAE71050 Hypothetical protein CBG17892 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.0E-126
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.0E-126
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.8E-46
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.0E-126
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.9E-96
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.1E-23
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.3E-9
Sequence
Target Sequence 
>C. ELEGANS:188819_AT
atcgtcggaatcgacctgatcgagtcgaaattcgagtcggccaaattcttcggagccacc
gaatgcatcaatccgaagagtgttgagcttcctgaggggaagagcttccaagcatggctc
gtggagcaatttgacggaggatttgactacacttttgagtgtattggaaatgtgcacaca
atgcgccaagccctcgaagccgcccacaaaggatggggagtctcgtgtatcatcggagtc
gccggagccggccaagagatcgccacccgtccattccaacttgtcaccgggcgcacgtgg
aagggaaccgcattcggcggatggaaatccgtggaaagtgtgccgagactcgtcgacgac
tacatgaacaagaagctgctcatcgatgaattcattactcatcgctggaacattgacgat
atcaatacggcgttcgatgttcttcacaagggagagagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGTCGGAATCGACCTGATCGAGT 116 35 676 Antisense
GACCTGATCGAGTCGAAATTCGAGT 567 381 688 Antisense
GAAATTCGAGTCGGCCAAATTCTTC 464 363 702 Antisense
GTCGGCCAAATTCTTCGGAGCCACC 58 471 711 Antisense
AATGCATCAATCCGAAGAGTGTTGA 164 165 737 Antisense
AGAGTGTTGAGCTTCCTGAGGGGAA 78 69 752 Antisense
AGAGCTTCCAAGCATGGCTCGTGGA 705 69 776 Antisense
GGAGCAATTTGACGGAGGATTTGAC 106 521 798 Antisense
TGACGATATCAATACGGCGTTCGAT 335 571 1089 Antisense
AATACGGCGTTCGATGTTCTTCACA 381 171 1099 Antisense
GATGTTCTTCACAAGGGAGAGAGTC 101 411 1111 Antisense
Sequence Source Affymetrix Proprietary Database