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[188818_s_at] Yeast YHX1 like

Description M7.5 /REP_DB=WormBase Gene ID /WP=CE18887 /TR=Q21591 /GB=CAA21650.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast YHX1 like
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 75      6grp_total > 90      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 462
1 2 3 4 range
A 916.9
(1.3)
P 		637.1
(-3)
P 		678.1
(-2.4)
P 		1027.9
(3)
P 		391
B 931.3
(1.1)
P 		670.4
(-2.3)
P 		615
(-3)
P 		1076.9
(3)
P 		462
C 788.8
(-0.2)
P 		622
(-3)
P 		706.2
(-1.6)
P 		984.1
(3)
P 		362
avr 879
(0.7) 		643.2
(-3) 		666.4
(-2.6) 		1029.6
(3) 		386

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 368
1 2 3 4 5 6 range
A 887.9
(0.3)
P 		1006.1
(2.4)
P 		692.3
(-3)
P 		1043.3
(3)
P 		894.4
(0.5)
P 		1032.1
(2.8)
P 		351
B 869.2
(-0.9)
P 		973.5
(3)
P 		842.3
(-1.9)
P 		965.1
(2.7)
P 		813.5
(-3)
P 		898.2
(0.2)
P 		160
C 883.9
(-0.8)
P 		951
(0.7)
P 		880
(-0.8)
P 		1060
(3)
P 		778.8
(-3)
P 		905.5
(-0.3)
P 		281
avr 880.3
(-0.9) 		976.9
(1.7) 		804.9
(-3) 		1022.8
(3) 		828.9
(-2.3) 		945.3
(0.9) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 333.8
(3)
P 		138.3
(-3)
P 		177.3
(-1.8)
P 		150.5
(-2.6)
P 		196
B 297
(3)
P 		165.6
(-2.1)
P 		142.5
(-3)
P 		229.5
(0.4)
P 		155
C 261.1
(3)
P 		178.8
(-2.2)
P 		246.1
(2.1)
P 		165.9
(-3)
P 		95
avr 297.3
(3) 		160.9
(-3) 		188.6
(-1.8) 		182
(-2.1) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 163.7
(-2.6)
P 		357.8
(3)
P 		150.8
(-3)
P 		264.6
(0.3)
P 		269.9
(0.5)
P 		251.3
(-0.1)
P 		207
B 302.4
(1.5)
P 		324
(2.5)
P 		204.5
(-3)
P 		255.6
(-0.6)
P 		330.5
(2.8)
P 		334.9
(3)
P 		130
C 327.6
(3)
P 		290.2
(1)
P 		224
(-2.4)
P 		213.2
(-3)
P 		252
(-1)
P 		303.1
(1.7)
P 		114
avr 264.6
(0.3) 		324
(3) 		193.1
(-3) 		244.5
(-0.6) 		284.1
(1.2) 		296.4
(1.7) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188818_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8936
Sequence Type Exemplar sequence
Representative Public ID M7.5 NCBI
Target Description M7.5 /REP_DB=WormBase Gene ID /WP=CE18887 /TR=Q21591 /GB=CAA21650.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast YHX1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069663(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069663 NCBI Caenorhabditis elegans M7.5 (M7.5) mRNA, complete cds. 11/11 None
M7.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:11078650:11081029:-1 gene:M7.5 11/11 None
M7.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:11078650:11081027:-1 gene:M7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11078795-11081028(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast YHX1 like
Ensembl M7.5
Entrez Gene 178005 Entrez gene
SwissProt Q21591 EMBL-EBI
WormBase CE18887 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248927_AT autophagy 7 (APG7) at
CANINE:1591870_AT similar to APG7 autophagy 7-like cfa
CANINE:1590643_AT similar to APG7 autophagy 7-like cfa
CANINE_2:CFA.14549.1.A1_AT similar to APG7 autophagy 7-like cfa
CANINE_2:CFA.18318.1.S1_S_AT similar to APG7 autophagy 7-like cfa
CANINE_2:CFA.7258.1.A1_AT similar to APG7 autophagy 7-like cfa
CANINE_2:CFA.7258.1.A1_S_AT similar to APG7 autophagy 7-like cfa
CANINE_2:CFAAFFX.8447.1.S1_S_AT similar to APG7 autophagy 7-like cfa
DROSOPHILA_2:1637240_A_AT Autophagy-specific gene 7 dm
DROSGENOME1:147451_AT Autophagy-specific gene 7 dm
CHICKEN:GGAAFFX.12055.1.S1_AT ATG7 autophagy related 7 homolog (S. cerevisiae) gga
CHICKEN:GGAAFFX.3074.1.S1_AT ATG7 autophagy related 7 homolog (S. cerevisiae) gga
CHICKEN:GGAAFFX.3074.1.S1_S_AT ATG7 autophagy related 7 homolog (S. cerevisiae) gga
HG-U133_PLUS_2:218673_S_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U133A:218673_S_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-FOCUS:218673_S_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U133A_2:218673_S_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:224025_S_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U133B:224025_S_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HU35KSUBA:RC_AA228118_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HU35KSUBD:RC_AA398736_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
U133_X3P:G5453667_3P_A_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
U133_X3P:HS.278607.0.S2_3P_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:222709_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U133B:222709_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U95B:44129_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
U133_X3P:HS2.378073.1.S1_3P_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
U133_X3P:HS2.189773.1.A1_3P_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:1556240_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:1569827_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U95E:68116_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:237119_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U133B:237119_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U95B:50987_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U95D:68704_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U95E:79302_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U95E:81095_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U95D:86989_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HG-U95D:87831_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
HU35KSUBB:RC_N63634_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
U133_X3P:HS.40478.0.A1_3P_AT ATG7 autophagy related 7 homolog (S. cerevisiae) hs
MOUSE430_2:1446633_AT autophagy-related 7 (yeast) mm
MOE430B:1446633_AT autophagy-related 7 (yeast) mm
MU11KSUBA:AA002704_AT autophagy-related 7 (yeast) mm
MG-U74AV2:102943_AT autophagy-related 7 (yeast) mm
MG-U74BV2:162673_AT autophagy-related 7 (yeast) mm
MOE430A:1428611_AT autophagy-related 7 (yeast) mm
MOUSE430A_2:1428611_AT autophagy-related 7 (yeast) mm
MOUSE430_2:1428611_AT autophagy-related 7 (yeast) mm
MOE430A:1428610_AT autophagy-related 7 (yeast) mm
MOUSE430A_2:1428610_AT autophagy-related 7 (yeast) mm
MOUSE430_2:1428610_AT autophagy-related 7 (yeast) mm
MOE430A:1428612_AT autophagy-related 7 (yeast) mm
MOUSE430A_2:1428612_AT autophagy-related 7 (yeast) mm
MOUSE430_2:1428612_AT autophagy-related 7 (yeast) mm
MG-U74BV2:108257_AT Autophagy-related 7 (yeast) (Atg7), mRNA mm
MG-U74BV2:115091_AT Autophagy-related 7 (yeast) (Atg7), mRNA mm
MOE430B:1446418_AT Autophagy-related 7 (yeast) (Atg7), mRNA mm
MOUSE430_2:1446418_AT Autophagy-related 7 (yeast) (Atg7), mRNA mm
MOUSE430_2:1447147_AT Autophagy-related 7 (yeast) (Atg7), mRNA mm
MOE430B:1447147_AT Autophagy-related 7 (yeast) (Atg7), mRNA mm
MU19KSUBA:TC25081_AT Autophagy-related 7 (yeast) (Atg7), mRNA mm
MU19KSUBC:TC39459_AT Autophagy-related 7 (yeast) (Atg7), mRNA mm
RAE230B:1394749_AT autophagy 7-like (S. cerevisiae) (predicted) rn
RAT230_2:1394749_AT autophagy 7-like (S. cerevisiae) (predicted) rn
RG-U34C:RC_AI179130_AT Autophagy 7-like (S. cerevisiae) (predicted) rn
RAE230B:1392744_AT Autophagy 7-like (S. cerevisiae) (predicted) rn
RAT230_2:1392744_AT Autophagy 7-like (S. cerevisiae) (predicted) rn
RAE230A:1374128_AT Autophagy 7-like (S. cerevisiae) (predicted) rn
RAT230_2:1374128_AT Autophagy 7-like (S. cerevisiae) (predicted) rn
RAE230A:1390184_AT Autophagy 7-like (S. cerevisiae) (predicted) rn
RAT230_2:1390184_AT Autophagy 7-like (S. cerevisiae) (predicted) rn
RAE230A:1390436_AT Autophagy 7-like (S. cerevisiae) (predicted) rn
RAT230_2:1390436_AT Autophagy 7-like (S. cerevisiae) (predicted) rn
RG-U34C:RC_AI180444_AT Autophagy 7-like (S. cerevisiae) (predicted) rn
YEAST_2:1773454_AT Autophagy-related protein and dual specificity member of the E1 family of ubiquitin-activating enzymes; mediates the conjugation of Atg12p with Atg5p and Atg8p with phosphatidylethanolamine, required steps in autophagosome formation. Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92753 Hypothetical protein M7.5 [Caenorhabditis elegans] emb|CAA21650.1| Hypothetical protein M7.5 [Caenorhabditis elegans] ref|NP_502064.1| M7.5 [Caenorhabditis elegans] 0.0
blast CAE61993 Hypothetical protein CBG06001 [Caenorhabditis briggsae] 0.0
blast XP_849849 PREDICTED: similar to APG7 autophagy 7-like isoform 3 [Canis familiaris] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR000594 EMBL-EBI UBA/THIF-type NAD/FAD binding fold 3.0E-17
Sequence
Target Sequence 
>C. ELEGANS:188818_S_AT
ctcgctggcttccaacagttttggctagtagacataagaagattgcaattagtgtcgcga
ttggattcgatacctacgtcatcattcggcatggaattggttctagaagcgaaagtgttt
cagatgtttcatcatcagattccgtaccatactctcagctttcttgctatttctgcagtg
atgtaactgctccaggaaattctactttcgatagaacattggaccaacagtgcactgttg
cacgaccaggaacatctatgattgcatctggaattgccgttgaactcttatcgtctgttt
tacaataccctgatccactcaagacaccagccagccacgacgataatacaacagtccttg
gagctgctccacatcaaattcgcggttttctgggaagattccagcagattcttccttctg
taaaacgattcgatcaatgtgttgcttgtggagacgctatcgctgcacagtttcagcaaa
atggctggaagtttgttcgcgacgttatgaactcgccaggtcgtctcgaagaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGCTGGCTTCCAACAGTTTTGGC 398 233 1349 Antisense
GGATTCGATACCTACGTCATCATTC 291 509 1411 Antisense
CATCATCAGATTCCGTACCATACTC 301 213 1478 Antisense
TACCATACTCTCAGCTTTCTTGCTA 68 651 1493 Antisense
GAATTGCCGTTGAACTCTTATCGTC 625 323 1619 Antisense
TACAATACCCTGATCCACTCAAGAC 86 641 1649 Antisense
TACAACAGTCCTTGGAGCTGCTCCA 111 643 1695 Antisense
TCCACATCAAATTCGCGGTTTTCTG 268 583 1716 Antisense
GATTCTTCCTTCTGTAAAACGATTC 457 427 1755 Antisense
GACGCTATCGCTGCACAGTTTCAGC 379 381 1801 Antisense
ACTCGCCAGGTCGTCTCGAAGAAGT 503 99 1859 Antisense
Sequence Source Affymetrix Proprietary Database