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[188817_at] phosphatase

Description T12B3.1 /REP_DB=WormBase Gene ID /WP=CE21176 /TR=Q9UAX0 /GB=AAD14737.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=phosphatase
Cluster 6grp_total > 14      4grp_total > 21      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 181.7
(0.6)
P 		96.3
(-1.9)
A 		57
(-3)
A 		262.8
(3)
P 		206
B 189.5
(2.1)
P 		85.2
(-1.6)
A 		46.4
(-3)
A 		215.9
(3)
P 		170
C 141.7
(0.2)
P 		108.4
(-0.9)
A 		41
(-3)
A 		229.2
(3)
P 		188
avr 171
(0.9) 		96.6
(-1.5) 		48.1
(-3) 		236
(3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 177.2
(3)
A 		106.2
(-0.2)
M 		90.6
(-1)
P 		105.9
(-0.3)
A 		80.7
(-1.4)
A 		46.1
(-3)
A 		131
B 153.2
(3)
P 		84.2
(-1.7)
P 		98.9
(-0.7)
A 		81.7
(-1.8)
A 		64.7
(-3)
A 		72
(-2.5)
A 		89
C 106.2
(0.6)
A 		147.7
(3)
P 		91.2
(-0.3)
A 		89
(-0.4)
P 		43.8
(-3)
A 		88.7
(-0.4)
M 		104
avr 145.5
(3) 		112.7
(0.6) 		93.6
(-0.8) 		92.2
(-0.9) 		63.1
(-3) 		68.9
(-2.6) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 66.2
(3)
P 		20.9
(-2.3)
A 		14.9
(-3)
A 		38.5
(-0.2)
P 		51
B 60.4
(3)
P 		21
(-1.8)
A 		10.8
(-3)
A 		46
(1.3)
P 		50
C 46.9
(3)
P 		31.2
(0.1)
A 		14.3
(-3)
A 		38.7
(1.5)
P 		33
avr 57.8
(3) 		24.4
(-1.5) 		13.3
(-3) 		41.1
(0.7) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 32.7
(1.8)
A 		37.8
(3)
M 		19.7
(-1.1)
P 		26.9
(0.5)
A 		24.3
(-0)
A 		11.2
(-3)
A 		27
B 53.3
(3)
P 		28
(-1.8)
P 		24
(-2.5)
A 		21.6
(-3)
A 		26.3
(-2.1)
A 		26.9
(-2)
A 		32
C 39.4
(1.9)
A 		45.1
(3)
P 		23.2
(-1.3)
A 		17.9
(-2.3)
P 		14.2
(-3)
A 		29.7
(0)
M 		31
avr 41.8
(3) 		37
(1.6) 		22.3
(-2.8) 		22.1
(-2.9) 		21.6
(-3) 		22.6
(-2.7) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188817_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9272
Sequence Type Exemplar sequence
Representative Public ID T12B3.1 NCBI
Target Description T12B3.1 /REP_DB=WormBase Gene ID /WP=CE21176 /TR=Q9UAX0 /GB=AAD14737.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068777(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068777 NCBI Caenorhabditis elegans T12B3.1 (phosphatase) mRNA, complete cds. 11/11 None
GENEFINDER00000023946 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7382393:7384736:1 11/11 None
T12B3.1 ENSEMBL cdna:known chromosome:CEL140:IV:7382399:7384736:1 gene:T12B3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023940 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7382404-7384742(+) 100.0 100.0
Public Domain and Genome References
Gene Title phosphatase
Ensembl T12B3.1
Entrez Gene 177510 Entrez gene
SwissProt Q9UAX0 EMBL-EBI
WormBase CE21176 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
5507 copper ion binding inferred from electronic annotation QuickGO AmiGO
8138 protein tyrosine/serine/threonine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD14737 Hypothetical protein T12B3.1 [Caenorhabditis elegans] ref|NP_501178.1| T12B3.1 [Caenorhabditis elegans] 0.0
blast CAE61871 Hypothetical protein CBG05851 [Caenorhabditis briggsae] 0.0
blast XP_881010 PREDICTED: similar to protein tyrosine phosphatase domain containing 1 protein isoform 2 isoform 2 [Bos taurus] 6.0E-47
Sequence
Target Sequence 
>C. ELEGANS:188817_AT
aaatgcgaagggccattacctgaaaataaatcattcgatgaacaattattaaatgctcaa
ttaaatgatgatgatcatgaaaaaactcatttttggtatatggatcaagtgaagaatggg
ctctcaatatctacaattagtcgtcaattagagaatgaagattttcgagatattatacgt
cttcttgatttgttctttcattcgacatttcatcaattgacgcataaagaggaaatattt
gcagttttacagaattgggatcaaactgaaaaggattggtctccaacgttttggttttta
ttaaaatgtatccgtgaaatgcctattcctcttcatttggcactatcacgtcttatttcc
aaatggttcctacgttctgaagtggaaatcgcgtcacgcatcaaacacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCGAAGGGCCATTACCTGAAA 548 117 913 Antisense
GAATGGGCTCTCAATATCTACAATT 234 333 1026 Antisense
ATTATACGTCTTCTTGATTTGTTCT 529 13 1084 Antisense
GTTCTTTCATTCGACATTTCATCAA 668 443 1104 Antisense
TGAAAAGGATTGGTCTCCAACGTTT 414 571 1179 Antisense
GTATCCGTGAAATGCCTATTCCTCT 681 451 1220 Antisense
TCTTCATTTGGCACTATCACGTCTT 53 617 1242 Antisense
GCACTATCACGTCTTATTTCCAAAT 665 315 1252 Antisense
ATTTCCAAATGGTTCCTACGTTCTG 518 15 1267 Antisense
TGAAGTGGAAATCGCGTCACGCATC 611 575 1290 Antisense
AATCGCGTCACGCATCAAACACATT 189 169 1299 Antisense
Sequence Source Affymetrix Proprietary Database