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[188814_s_at] Zinc finger

Description F08C6.7 /REP_DB=WormBase Gene ID /WP=CE02596 /TR=Q19203 /GB=AAA68726.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 11      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 41      6grp_total > 23      4grp_total > 53      6grp_cgc > 60      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 615
1 2 3 4 range
A 1102.3
(3)
P 		910.8
(0.4)
P 		762
(-1.7)
P 		664.2
(-3)
P 		438
B 1099.9
(3)
P 		859.7
(0.6)
P 		728.7
(-0.6)
P 		487
(-3)
P 		613
C 1006
(3)
P 		798.6
(0.2)
P 		722.5
(-0.9)
P 		568.2
(-3)
P 		438
avr 1069.4
(3) 		856.4
(0.4) 		737.7
(-1) 		573.1
(-3) 		496

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 808.3
(3)
P 		712.1
(1.5)
P 		789.3
(2.7)
P 		733.5
(1.9)
P 		613.7
(0)
P 		413.3
(-3)
P 		395
B 801
(3)
P 		682.6
(1.1)
P 		588
(-0.5)
P 		587.3
(-0.5)
P 		509.8
(-1.8)
P 		435.4
(-3)
P 		366
C 713.8
(1.6)
P 		706.8
(1.5)
P 		794.9
(3)
P 		670.5
(0.8)
P 		461.8
(-2.8)
P 		448.3
(-3)
P 		347
avr 774.4
(3) 		700.5
(1.7) 		724.1
(2.1) 		663.8
(1.1) 		528.4
(-1.3) 		432.3
(-3) 		342
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 401.3
(3)
P 		197.7
(-1)
P 		199.2
(-1)
P 		97.2
(-3)
P 		304
B 350.8
(3)
P 		212.3
(-0.4)
P 		168.9
(-1.4)
P 		103.8
(-3)
P 		247
C 333
(3)
P 		229.6
(0.4)
P 		251.8
(0.9)
P 		95.8
(-3)
P 		237
avr 361.7
(3) 		213.2
(-0.4) 		206.6
(-0.5) 		98.9
(-3) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 149
(-1.1)
P 		253.3
(3)
P 		171.9
(-0.2)
P 		186
(0.4)
P 		185.2
(0.3)
P 		100.6
(-3)
P 		153
B 278.7
(3)
P 		227.2
(0.7)
P 		142.8
(-3)
P 		155.6
(-2.4)
P 		207.1
(-0.2)
P 		162.4
(-2.1)
P 		136
C 264.6
(3)
P 		215.7
(0.7)
P 		202.3
(0.1)
P 		134.8
(-3)
P 		149.4
(-2.3)
P 		150.1
(-2.3)
P 		130
avr 230.8
(2.9) 		232.1
(3) 		172.3
(-0.8) 		158.8
(-1.7) 		180.6
(-0.3) 		137.7
(-3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188814_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16721
Sequence Type Exemplar sequence
Representative Public ID F08C6.7 NCBI
Target Description F08C6.7 /REP_DB=WormBase Gene ID /WP=CE02596 /TR=Q19203 /GB=AAA68726.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076883(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076883 NCBI Caenorhabditis elegans UNCoordinated family member (unc-98) (unc-98) mRNA, complete cds. 11/11 None
SNAP00000044579 ENSEMBL cdna:SNAP chromosome:CEL140:X:7570583:7573277:-1 11/11 None
GENEFINDER00000044586 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7570583:7573517:-1 11/11 None
F08C6.7 ENSEMBL cdna:known chromosome:CEL140:X:7570314:7573619:-1 gene:F08C6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7570581-7573516(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger
Gene Symbol unc-98
Ensembl F08C6.7
Entrez Gene 181020 Entrez gene
SwissProt Q19203 EMBL-EBI
WormBase CE31900 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68726 Uncoordinated protein 98 [Caenorhabditis elegans] ref|NP_509284.2| UNCoordinated family member (unc-98) [Caenorhabditis elegans] gb|AAM76039.1| UNC-98 [Caenorhabditis elegans] sp|Q19203|UNC98_CAEEL Zinc finger protein unc-98 (Uncoordinated protein 98) 0.0
blast CAE70243 Hypothetical protein CBG16732 [Caenorhabditis briggsae] 1.0E-166
blast AAA68726 Uncoordinated protein 98 [Caenorhabditis elegans] ref|NP_509284.2| UNCoordinated family member (unc-98) [Caenorhabditis elegans] gb|AAM76039.1| UNC-98 [Caenorhabditis elegans] sp|Q19203|UNC98_CAEEL Zinc finger protein unc-98 (Uncoordinated protein 98) 1.0E-165
blast CAE70243 Hypothetical protein CBG16732 [Caenorhabditis briggsae] 1.0E-147
blast XP_853587 PREDICTED: similar to zinc finger protein 91 (HPF7, HTF10) [Canis familiaris] 6.0E-18
blast XP_853587 PREDICTED: similar to zinc finger protein 91 (HPF7, HTF10) [Canis familiaris] 8.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.8E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.8E-5
Sequence
Target Sequence 
>C. ELEGANS:188814_S_AT
tacaagtgtcgtttctgcggactcacattcaacttcatgaacactctccgtgcacacgag
agaatacatgacgtttcacagccatatgtctgtggaaaatgcggagactcatttgaattt
gcttgccaactggaatatcatgccgctcagcactcagaaattgacgggtacaagtgtgaa
tgcggaaggacgttcttttcttacacggaaatgttatatcacaagcacacggacgatcca
ctcgaattgataggtgctccagagacaaccacaataaaagtaagcaagaagcgagtccta
ccggtctccgagcaagatcttccacagccagctttcgttactgaaggatacgagccgaag
catccactccgagtgtacaacgacgttcgttcaaaaccatacatttgtgaatattgttcg
aaaagctactctgacagtcgtggtcttgcatatcacatgtacagtcatcgtggagagaag
tacttcaatcctcgagcatctcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAAGTGTCGTTTCTGCGGACTCA 522 641 289 Antisense
GAACACTCTCCGTGCACACGAGAGA 678 351 327 Antisense
TCATGCCGCTCAGCACTCAGAAATT 29 621 426 Antisense
TGCGGAAGGACGTTCTTTTCTTACA 304 553 469 Antisense
CACACGGACGATCCACTCGAATTGA 445 195 514 Antisense
AAGCAAGAAGCGAGTCCTACCGGTC 452 151 570 Antisense
CTACCGGTCTCCGAGCAAGATCTTC 559 225 586 Antisense
TCCACAGCCAGCTTTCGTTACTGAA 172 589 609 Antisense
CCACTCCGAGTGTACAACGACGTTC 516 271 652 Antisense
GCTACTCTGACAGTCGTGGTCTTGC 340 303 713 Antisense
TACTTCAATCCTCGAGCATCTCGTT 599 645 769 Antisense
Sequence Source Affymetrix Proprietary Database