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[188813_at]

Description T24A6.3 /REP_DB=WormBase Gene ID /WP=CE21198 /TR=O61949 /GB=AAD34664.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ground-like
Cluster 6grp_total > 92      4grp_total > 25      6grp_cgc > 98      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 32.3
(-3)
A 		54.8
(0.5)
A 		68.2
(2.6)
A 		70.5
(3)
A 		38
B 2.5
(-3)
A 		23.8
(3)
A 		11
(-0.6)
A 		5.6
(-2.1)
A 		21
C 12.7
(-2.3)
A 		7.2
(-3)
A 		9.5
(-2.7)
A 		55.9
(3)
A 		49
avr 15.8
(-3) 		28.6
(-0.3) 		29.6
(-0.1) 		44
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 38.3
(2.7)
A 		25.9
(0.6)
A 		31.9
(1.6)
A 		36.6
(2.4)
A 		40.4
(3)
A 		4.4
(-3)
A 		36
B 22.6
(0.1)
A 		18.3
(-0.8)
A 		9.4
(-2.6)
A 		11.1
(-2.3)
A 		37
(3)
A 		7.4
(-3)
A 		30
C 2.1
(-3)
A 		32.3
(2)
A 		38.6
(3)
A 		31.3
(1.8)
A 		32.9
(2.1)
A 		12.7
(-1.3)
A 		37
avr 21
(-0.3) 		25.5
(0.6) 		26.6
(0.9) 		26.3
(0.8) 		36.8
(3) 		8.2
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 11.8
(-1.8)
A 		11.9
(-1.7)
A 		17.8
(3)
A 		10.3
(-3)
A 		8
B 0.8
(-3)
A 		5.9
(3)
A 		2.5
(-1)
A 		1.2
(-2.5)
A 		5
C 4.2
(-1.3)
A 		2.1
(-3)
A 		3.3
(-2)
A 		9.4
(3)
A 		7
avr 5.6
(-3) 		6.6
(-0.4) 		7.9
(3) 		7
(0.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 7.1
(0.2)
A 		9.2
(1.4)
A 		6.9
(0.1)
A 		9.3
(1.4)
A 		12.2
(3)
A 		1.1
(-3)
A 		11
B 7.9
(-0.4)
A 		6.1
(-1.2)
A 		2.3
(-3)
A 		2.9
(-2.7)
A 		15.1
(3)
A 		2.8
(-2.8)
A 		13
C 0.8
(-3)
A 		9.9
(2.6)
A 		9.8
(2.5)
A 		6.3
(0.4)
A 		10.6
(3)
A 		4.2
(-0.9)
A 		10
avr 5.3
(-1.4) 		8.4
(0.5) 		6.3
(-0.8) 		6.2
(-0.9) 		12.6
(3) 		2.7
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188813_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15713
Sequence Type Exemplar sequence
Representative Public ID T24A6.3 NCBI
Target Description T24A6.3 /REP_DB=WormBase Gene ID /WP=CE21198 /TR=O61949 /GB=AAD34664.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ground-like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000027431 ENSEMBL cdna:SNAP chromosome:CEL140:V:3556207:3556629:1 11/11 None
GENEFINDER00000027438 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3556207:3556629:1 11/11 None
T24A6.3 ENSEMBL cdna:known chromosome:CEL140:V:3556207:3556629:1 gene:T24A6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3556206-3556629(+) 100.0 100.0
Public Domain and Genome References
Ensembl T24A6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE58205 Hypothetical protein CBG01300 [Caenorhabditis briggsae] 2.0E-35
blast CAE58215 Hypothetical protein CBG01310 [Caenorhabditis briggsae] 7.0E-35
blast AAK73895 Ground-like (grd related) protein 29 [Caenorhabditis elegans] ref|NP_503997.1| GRound-Like (grd related) family member (grl-29) [Caenorhabditis elegans] 1.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 1.9E-23
Sequence
Target Sequence 
>C. ELEGANS:188813_AT
atcctcctgtggctgtggtggaaagaagaagagatctcttcctgaaaaaccgacgttcca
tggaattgctgcttcggatgaagatgtgatgtgtaacactccggaattgaagaaaattat
caatgagaacatgcaagcctctgcggtcgattcctcgaaagccatcaatggagcattgga
aagcaaggagctcaatagattcactgtagtgtgctcggagaatcaatttgtcttcacaat
ccgcgccgacactgcctactgtggagcgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCTCCTGTGGCTGTGGTGGAAAG 467 35 33 Antisense
GAGATCTCTTCCTGAAAAACCGACG 493 395 63 Antisense
GAAAAACCGACGTTCCATGGAATTG 449 355 76 Antisense
TCCATGGAATTGCTGCTTCGGATGA 451 589 89 Antisense
GAAGATGTGATGTGTAACACTCCGG 140 337 112 Antisense
TGAGAACATGCAAGCCTCTGCGGTC 256 569 156 Antisense
GGTCGATTCCTCGAAAGCCATCAAT 12 503 177 Antisense
GCAAGGAGCTCAATAGATTCACTGT 592 321 215 Antisense
GATTCACTGTAGTGTGCTCGGAGAA 268 431 230 Antisense
ATCAATTTGTCTTCACAATCCGCGC 74 27 254 Antisense
CGACACTGCCTACTGTGGAGCGAAG 554 251 279 Antisense
Sequence Source Affymetrix Proprietary Database