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[188812_at] 7TM chemoreceptor, srb family

Description F23F12.10 /REP_DB=WormBase Gene ID /WP=CE01248 /GEN=srb-11 /TR=SW:P46506 /GB=AAA20612.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 37      6grp_total_sub > Hat      6grp_cgc > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 24.1
(3)
A 		4.2
(-3)
A 		15.8
(0.5)
A 		10.5
(-1.1)
A 		20
B 6.9
(-0.6)
A 		15.2
(3)
A 		1.4
(-3)
A 		4.2
(-1.8)
A 		14
C 12.6
(0.4)
A 		18.3
(2.3)
A 		2.1
(-3)
A 		20.4
(3)
A 		18
avr 14.5
(3) 		12.6
(1.6) 		6.4
(-3) 		11.7
(0.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 3.5
(-3)
A 		5.5
(-2.7)
A 		7.8
(-2.3)
A 		3.7
(-3)
A 		27.3
(0.9)
A 		40.3
(3)
A 		37
B 18.7
(3)
A 		3.3
(-2.3)
A 		1.6
(-2.9)
A 		3.4
(-2.3)
A 		1.3
(-3)
A 		1.8
(-2.8)
A 		17
C 2
(-3)
A 		56.1
(3)
A 		8
(-2.3)
A 		8.9
(-2.2)
A 		3.5
(-2.8)
A 		14.5
(-1.6)
A 		54
avr 8.1
(-2) 		21.6
(3) 		5.8
(-2.8) 		5.3
(-3) 		10.7
(-1) 		18.9
(2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 8.8
(3)
A 		0.9
(-3)
A 		4.1
(-0.6)
A 		1.5
(-2.5)
A 		8
B 2.2
(0.3)
A 		3.8
(3)
A 		0.3
(-3)
A 		0.9
(-2)
A 		4
C 4.2
(1.6)
A 		5.3
(3)
A 		0.7
(-3)
A 		3.4
(0.5)
A 		5
avr 5.1
(3) 		3.3
(-0.2) 		1.7
(-3) 		1.9
(-2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.7
(-3)
A 		2
(-2.1)
A 		1.7
(-2.3)
A 		0.9
(-2.9)
A 		8.2
(1.9)
A 		9.8
(3)
A 		9
B 6.5
(3)
A 		1.1
(-2.3)
A 		0.4
(-3)
A 		0.9
(-2.5)
A 		0.5
(-2.9)
A 		0.7
(-2.7)
A 		6
C 0.7
(-3)
A 		17.1
(3)
A 		2
(-2.5)
A 		1.8
(-2.6)
A 		1.1
(-2.9)
A 		4.9
(-1.5)
A 		16
avr 2.6
(-1.5) 		6.7
(3) 		1.4
(-2.8) 		1.2
(-3) 		3.3
(-0.7) 		5.1
(1.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188812_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6670
Sequence Type Exemplar sequence
Representative Public ID F23F12.10 NCBI
Target Description F23F12.10 /REP_DB=WormBase Gene ID /WP=CE01248 /GEN=srb-11 /TR=SW:P46506 /GB=AAA20612.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066029 NCBI Caenorhabditis elegans Serpentine Receptor, class B (beta) family member (srb-11) (srb-11) mRNA, complete cds. 11/11 None
GENEFINDER00000039913 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6491303:6492369:-1 11/11 None
F23F12.10 ENSEMBL cdna:known chromosome:CEL140:III:6491303:6493338:-1 gene:F23F12.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039903 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6491301-6493337(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srb family
Gene Symbol srb-11
Ensembl F23F12.10
Entrez Gene 191793 Entrez gene
WormBase CE38175 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast P46506 Serpentine receptor class beta-11 (Protein srb-11) prf||2123261Y chemosensory receptor 1.0E-173
blast NP_498430 Serpentine Receptor, class B (beta) family member (srb-11) [Caenorhabditis elegans] gb|AAA20612.2| Serpentine receptor, class b (beta) protein 11 [Caenorhabditis elegans] 1.0E-165
blast P46506 Serpentine receptor class beta-11 (Protein srb-11) prf||2123261Y chemosensory receptor 1.0E-123
blast NP_498430 Serpentine Receptor, class B (beta) family member (srb-11) [Caenorhabditis elegans] gb|AAA20612.2| Serpentine receptor, class b (beta) protein 11 [Caenorhabditis elegans] 1.0E-122
blast NP_498430 Serpentine Receptor, class B (beta) family member (srb-11) [Caenorhabditis elegans] gb|AAA20612.2| Serpentine receptor, class b (beta) protein 11 [Caenorhabditis elegans] 1.0E-105
blast P46506 Serpentine receptor class beta-11 (Protein srb-11) prf||2123261Y chemosensory receptor 1.0E-105
blast CAE73646 Hypothetical protein CBG21146 [Caenorhabditis briggsae] 9.0E-93
blast CAE73646 Hypothetical protein CBG21146 [Caenorhabditis briggsae] 4.0E-70
blast CAE73646 Hypothetical protein CBG21146 [Caenorhabditis briggsae] 5.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 3.3E-62
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 2.3E-30
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 1.4E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498430.2 7 25-44,57-79,105-127,140-162,185-207,237-259,274-296
F23F12.10 6 21-43,112-134,147-169,192-214,244-266,281-303
GENEFINDER00000039913 4 12-34,57-79,109-131,146-168
Sequence
Target Sequence 
>C. ELEGANS:188812_AT
gcgtcggtagttatggggccaattcttgttggattcaatgttctattgaacttttgtatt
atctttaacatgttaaaagatgaaagttacactgatggaaatgtatcgttttctgttatt
ccagcagtcgctgctcagaaagcgtttaccttttttataattatatttttcgtcaatctc
gtagatgttatatttgatttaatattacttcgaatgaatcttaaattgaaattacaattg
aaaaattcttcacttgctgtaaaatatcaactggaagaagtctatcaatccactaaattt
tccgtatttcttattttaattcatattatttcattcgggatttatgtatctgctgtggta
ttttttcgatatttcggaaatctgataatttcagaccccgactctttattcggagtcaga
actttttcgacaacaatagttcctacatataatttcgttattggaagcttctcaagtttt
tttaaccgaataaaattgaagaagtctgagggagcaactattcaaatgtcttcaactgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTCGGTAGTTATGGGGCCAATTC 4 247 445 Antisense
GTATCGTTTTCTGTTATTCCAGCAG 35 443 547 Antisense
GTTATTCCAGCAGTCGCTGCTCAGA 342 447 559 Antisense
GCTGCTCAGAAAGCGTTTACCTTTT 85 295 574 Antisense
AATTATATTTTTCGTCAATCTCGTA 325 173 603 Antisense
GAAAAATTCTTCACTTGCTGTAAAA 384 355 684 Antisense
ATCAATCCACTAAATTTTCCGTATT 648 25 728 Antisense
ATGTATCTGCTGTGGTATTTTTTCG 586 47 788 Antisense
TTCAGACCCCGACTCTTTATTCGGA 263 687 834 Antisense
GGAGTCAGAACTTTTTCGACAACAA 709 515 856 Antisense
AACTATTCAAATGTCTTCAACTGGA 675 139 960 Antisense
Sequence Source Affymetrix Proprietary Database