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[188811_s_at] PHD-finger.

Description Y51H1A.4 /REP_DB=WormBase Gene ID /WP=CE20286 /TR=Q9XWJ8 /GB=CAA21665.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=PHD-finger.
Cluster 6grp_total > 79      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 385
1 2 3 4 range
A 215.7
(3)
A 		44.5
(-2.8)
A 		39.4
(-3)
A 		164.2
(1.2)
A 		176
B 301.9
(3)
A 		86.9
(-1.7)
A 		147.2
(-0.4)
A 		26.3
(-3)
A 		276
C 410.8
(3)
A 		47.5
(-3)
A 		178.4
(-0.8)
A 		222.5
(-0.1)
A 		363
avr 309.5
(3) 		59.6
(-3) 		121.7
(-1.5) 		137.7
(-1.1) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 119.9
(-1.6)
A 		204.2
(1.4)
A 		119.1
(-1.6)
A 		144.4
(-0.7)
A 		81.1
(-3)
A 		249.6
(3)
A 		169
B 168.7
(0)
A 		157.2
(-0.4)
A 		81.4
(-3)
A 		100.8
(-2.3)
A 		199.5
(1.1)
A 		254.9
(3)
P 		174
C 178.4
(-0)
A 		137.7
(-1.3)
A 		146.4
(-1)
A 		83.4
(-3)
A 		274.4
(3)
A 		212.7
(1.1)
P 		191
avr 155.7
(-0.9) 		166.4
(-0.4) 		115.6
(-2.7) 		109.5
(-3) 		185
(0.5) 		239.1
(3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 78.5
(3)
A 		9.7
(-3)
A 		10.3
(-2.9)
A 		24
(-1.8)
A 		69
B 96.3
(3)
A 		21.5
(-1.9)
A 		34.1
(-1.1)
A 		5.6
(-3)
A 		91
C 136
(3)
A 		13.7
(-3)
A 		62.2
(-0.6)
A 		37.5
(-1.8)
A 		122
avr 103.6
(3) 		15
(-3) 		35.5
(-1.6) 		22.4
(-2.5) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 22.1
(-3)
A 		72.6
(3)
A 		25.9
(-2.5)
A 		36.6
(-1.3)
A 		24.5
(-2.7)
A 		60.8
(1.6)
A 		51
B 58.7
(0.1)
A 		52.3
(-0.4)
A 		19.8
(-3)
A 		26.7
(-2.5)
A 		81.1
(1.9)
A 		95.1
(3)
P 		75
C 66.1
(1.1)
A 		42
(-0.9)
A 		37.3
(-1.3)
A 		16.8
(-3)
A 		88.8
(3)
A 		71.2
(1.5)
P 		72
avr 49
(-0.3) 		55.6
(0.5) 		27.7
(-2.9) 		26.7
(-3) 		64.8
(1.7) 		75.7
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188811_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3534
Sequence Type Exemplar sequence
Representative Public ID Y51H1A.4 NCBI
Target Description Y51H1A.4 /REP_DB=WormBase Gene ID /WP=CE20286 /TR=Q9XWJ8 /GB=CAA21665.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=PHD-finger.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064508(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064508 NCBI Caenorhabditis elegans Y51H1A.4 (PHD-finger.) mRNA, complete cds. 11/11 None
SNAP00000044415 ENSEMBL cdna:SNAP chromosome:CEL140:II:13861018:13882158:1 11/11 None
GENEFINDER00000044418 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13875956:13882158:1 11/11 None
Y51H1A.4.2 ENSEMBL cdna:known chromosome:CEL140:II:13875927:13882471:1 gene:Y51H1A.4 11/11 None
Y51H1A.4.1 ENSEMBL cdna:known chromosome:CEL140:II:13875928:13882471:1 gene:Y51H1A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13875952-13882155(+) 100.0 100.0
Public Domain and Genome References
Gene Title PHD-finger.
Ensembl Y51H1A.4
Entrez Gene 3564936 Entrez gene
SwissProt Q9XWJ8 EMBL-EBI
WormBase CE20286 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588575_AT similar to inhibitor of growth family, member 3 isoform 2 cfa
CANINE_2:CFA.16254.1.A1_S_AT similar to inhibitor of growth family, member 3 isoform 2 cfa
CANINE_2:CFAAFFX.6171.1.S1_AT similar to inhibitor of growth family, member 3 isoform 2 cfa
CHICKEN:GGAAFFX.12351.1.S1_S_AT inhibitor of growth family, member 3 gga
HG-U133_PLUS_2:205070_AT inhibitor of growth family, member 3 hs
HG-U133A:205070_AT inhibitor of growth family, member 3 hs
HG-FOCUS:205070_AT inhibitor of growth family, member 3 hs
HG-U133A_2:205070_AT inhibitor of growth family, member 3 hs
HG-U95AV2:31808_AT inhibitor of growth family, member 3 hs
HU35KSUBA:R14652_AT inhibitor of growth family, member 3 hs
HU35KSUBB:RC_H11463_AT inhibitor of growth family, member 3 hs
U133_X3P:G9506658_3P_AT inhibitor of growth family, member 3 hs
U133_X3P:HS.318779.0.S1_3P_AT inhibitor of growth family, member 3 hs
U133_X3P:HS.171586.0.A1_3P_AT inhibitor of growth family, member 3 hs
HG-U133_PLUS_2:231863_AT inhibitor of growth family, member 3 hs
HG-U133B:231863_AT inhibitor of growth family, member 3 hs
HG-U133_PLUS_2:242293_AT inhibitor of growth family, member 3 hs
HG-U133B:242293_AT inhibitor of growth family, member 3 hs
HG-U95E:77980_AT inhibitor of growth family, member 3 hs
HG-U95E:78172_AT inhibitor of growth family, member 3 hs
HG-U95D:82961_AT inhibitor of growth family, member 3 hs
MG-U74BV2:112797_AT inhibitor of growth family, member 3 mm
MG-U74CV2:134067_R_AT inhibitor of growth family, member 3 mm
MOE430A:1422806_X_AT inhibitor of growth family, member 3 mm
MOUSE430A_2:1422806_X_AT inhibitor of growth family, member 3 mm
MOUSE430_2:1422806_X_AT inhibitor of growth family, member 3 mm
MOE430A:1450760_A_AT inhibitor of growth family, member 3 mm
MOUSE430A_2:1450760_A_AT inhibitor of growth family, member 3 mm
MOUSE430_2:1450760_A_AT inhibitor of growth family, member 3 mm
MOE430A:1422805_A_AT inhibitor of growth family, member 3 mm
MOUSE430A_2:1422805_A_AT inhibitor of growth family, member 3 mm
MOUSE430_2:1422805_A_AT inhibitor of growth family, member 3 mm
MOE430B:1460082_AT inhibitor of growth family, member 3 mm
MOUSE430_2:1460082_AT inhibitor of growth family, member 3 mm
MU19KSUBB:TC34257_AT Inhibitor of growth family, member 3, mRNA (cDNA clone MGC:25765 IMAGE:4010253) mm
RAE230A:1372945_AT Inhibitor of growth family, member 3 (predicted) rn
RAT230_2:1372945_AT Inhibitor of growth family, member 3 (predicted) rn
YEAST_2:1778877_AT Probable component of the Rpd3 histone deacetylase complex, involved in transcriptional regulation of PHO5; C-terminus has similarity to human candidate tumor suppressor p33(ING1) Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21665 Hypothetical protein Y51H1A.4 [Caenorhabditis elegans] ref|NP_496909.1| Y51H1A.4 [Caenorhabditis elegans] 0.0
blast CAE73262 Hypothetical protein CBG20678 [Caenorhabditis briggsae] 1.0E-154
blast CAE73262 Hypothetical protein CBG20678 [Caenorhabditis briggsae] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 7.5E-16
Pfam IPR008699 EMBL-EBI NADH-ubiquinone oxidoreductase ASHI subunit 1.0E-126
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 7.5E-16
Sequence
Target Sequence 
>C. ELEGANS:188811_S_AT
ggaatcgacgaatcatcaccgacgccgacgacaagcctactgatgacaccgacgttctcc
tcaggaccgcatatcgtcgtttcgccgacgactccagttctccagaattcggcgtttgtg
gtgtctgagagccgtcatggtagaactcggaagctgaccagtagagttcaggagatgttt
aaggagactctacagcggcagcggaatcatggaaattcaattatagcactacaggagaga
atgagtgcggcgaatctggcggcggcggctcagcacgctcacgctccgacgagctcttca
ccacaatcaccacttccggagattgaaggagccgccgaggatgatgatgaggaaggaccg
agttatcggattaagcggagccatccgatgatggctccgggatcggaggatgaggaggat
gagatgcattggtgtttttgtaatgagaagagctatggagatatggttcagtgtgataat
cgtcattgcaccctccgctggttccattacccgtgcattggaatggtcgagcctccgact
ggaaaatggtactgtccgcggtgtgaagttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATCGACGAATCATCACCGACGC 17 533 871 Antisense
CGACGACAAGCCTACTGATGACACC 479 251 896 Antisense
ACTCCAGTTCTCCAGAATTCGGCGT 265 95 961 Antisense
AATTCGGCGTTTGTGGTGTCTGAGA 352 177 976 Antisense
GGTGTCTGAGAGCCGTCATGGTAGA 591 499 990 Antisense
GACTCTACAGCGGCAGCGGAATCAT 333 373 1056 Antisense
GAATGAGTGCGGCGAATCTGGCGGC 574 329 1109 Antisense
GAAGGAGCCGCCGAGGATGATGATG 113 335 1195 Antisense
CCATCCGATGATGGCTCCGGGATCG 416 269 1251 Antisense
TGCATTGGAATGGTCGAGCCTCCGA 578 577 1384 Antisense
GGTACTGTCCGCGGTGTGAAGTTAC 366 505 1418 Antisense
Sequence Source Affymetrix Proprietary Database