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[188810_at] 7TM receptor

Description T10H4.2 /REP_DB=WormBase Gene ID /WP=CE16387 /TR=O18083 /GB=CAB03331.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 42      4grp_total > 09      6grp_cgc > 80      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 25.3
(-0.3)
A
3.3
(-3)
A
22.7
(-0.6)
A
52.3
(3)
A
49
B 2.5
(-3)
A
27.7
(0.7)
A
4.1
(-2.8)
A
43.8
(3)
A
41
C 2.3
(-3)
A
5.3
(-2.7)
A
18.5
(-1.4)
A
63.1
(3)
A
61
avr 10
(-3)
12.1
(-2.7)
15.1
(-2.3)
53.1
(3)
43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 38.8
(0.8)
A
3.9
(-3)
A
59.3
(3)
A
7.2
(-2.6)
A
8.3
(-2.5)
A
3.7
(-3)
A
56
B 9.8
(-1.6)
A
24.7
(3)
A
7.9
(-2.2)
A
6
(-2.8)
A
7.7
(-2.3)
A
5.3
(-3)
A
19
C 2.7
(-3)
A
8.1
(-1.9)
A
12.8
(-0.9)
A
31.6
(3)
A
21.2
(0.8)
A
4.1
(-2.7)
A
29
avr 17.1
(0.4)
12.2
(-0.9)
26.7
(3)
14.9
(-0.2)
12.4
(-0.8)
4.4
(-3)
22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.2
(3)
A
0.7
(-3)
A
5.9
(0.7)
A
7.7
(1.9)
A
9
B 0.8
(-3)
A
6.8
(1.2)
A
1
(-2.9)
A
9.3
(3)
A
9
C 0.8
(-3)
A
1.5
(-2.6)
A
6.4
(0.4)
A
10.6
(3)
A
10
avr 3.6
(-2.4)
3
(-3)
4.4
(-1.6)
9.2
(3)
6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.2
(0.2)
A
1.4
(-2.8)
A
12.9
(3)
A
1.8
(-2.6)
A
2.5
(-2.2)
A
0.9
(-3)
A
12
B 3.4
(-1.4)
A
8.2
(3)
A
1.9
(-2.7)
A
1.6
(-3)
A
3.1
(-1.6)
A
2
(-2.6)
A
7
C 1
(-3)
A
2.5
(-1.5)
A
3.2
(-0.8)
A
6.4
(2.5)
A
6.9
(3)
A
1.4
(-2.6)
A
6
avr 3.9
(0.3)
4
(0.4)
6
(3)
3.3
(-0.5)
4.2
(0.7)
1.4
(-3)
5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188810_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14434
Sequence Type Exemplar sequence
Representative Public ID T10H4.2 NCBI
Target Description T10H4.2 /REP_DB=WormBase Gene ID /WP=CE16387 /TR=O18083 /GB=CAB03331.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074388(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_074388 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-96) (str-96) mRNA, complete cds. 11/11 None
T10H4.2 ENSEMBL cdna:known chromosome:CEL140:V:15295076:15296551:-1 gene:T10H4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030483 8/11 Cross Hyb Matching Probes None
GENEFINDER00000030487 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15295075-15296551(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-96
Ensembl T10H4.2
Entrez Gene 188391 Entrez gene
SwissProt O18083 EMBL-EBI
WormBase CE16387 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03331 Hypothetical protein T10H4.2 [Caenorhabditis elegans] ref|NP_506789.1| Seven TM Receptor family member (str-96) [Caenorhabditis elegans] 0.0
blast CAE71664 Hypothetical protein CBG18636 [Caenorhabditis briggsae] 7.0E-88
blast CAE71668 Hypothetical protein CBG18640 [Caenorhabditis briggsae] 2.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.6E-12
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.5E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506789.1 7 10-32,45-64,92-114,134-156,213-235,262-284,294-316
T10H4.2 7 10-32,45-64,92-114,134-156,213-235,262-284,294-316
Sequence
Target Sequence
>C. ELEGANS:188810_AT
ggaagcttactgcttggagcctgatgagtattcgtatgttggaccacaatatttctacga
acaccgcaaaattatcgattcgaatgaagaaatcagggagaagatcttccatcttccatc
tttccttggaatcgggatcattgccgttttaatggttggaattttggtttcttctgcttt
atttggagccgaaacttacaaaattctcaatgctcaaggactcgcatgctatgcagctaa
ggaactacagaagcagcttttcaaaactttggtaattcaaagctcgatcccgatgatctt
tatggttctaccgataacatgtatgttcttgcttccattttttggtgtcaaagttggaga
agttgcaaatttaatcccgatgtgtgcggcgatatacccatgtttgaatccaatgatcgc
catgattttcatcaaagatttcagtaatagaataattgaaatcatcacctgctctaaagg
acgacgcttcaaggttggcacgttgccagccagctccgccgataacacgaataca


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GGAAGCTTACTGCTTGGAGCCTGAT 410 531 528 Antisense
TCCATCTTCCATCTTTCCTTGGAAT 575 589 635 Antisense
TTTTGGTTTCTTCTGCTTTATTTGG 623 673 689 Antisense
GCTCAAGGACTCGCATGCTATGCAG 629 301 739 Antisense
TGGTAATTCAAAGCTCGATCCCGAT 23 553 797 Antisense
CCCGATGATCTTTATGGTTCTACCG 546 259 816 Antisense
ACATGTATGTTCTTGCTTCCATTTT 496 107 844 Antisense
TGTGCGGCGATATACCCATGTTTGA 88 557 910 Antisense
CACCTGCTCTAAAGGACGACGCTTC 503 201 993 Antisense
GACGCTTCAAGGTTGGCACGTTGCC 648 379 1010 Antisense
CAGCTCCGCCGATAACACGAATACA 585 201 1038 Antisense
Sequence Source Affymetrix Proprietary Database