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Cluster Members Consensus/Exemplar |
GeneChip Array Information |
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188810_at |
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C. elegans Genome Array |
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Nematode |
Probe Design Information |
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affy.Ce.14434
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Exemplar sequence
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T10H4.2 NCBI
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T10H4.2 /REP_DB=WormBase Gene ID /WP=CE16387 /TR=O18083 /GB=CAB03331.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
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This cluster is supported by a Sanger Annotation. |
Annotation Method Description |
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This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s). |
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This is a grade A annotation. |
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NM_074388(11) |
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NM_074388 NCBI |
Caenorhabditis elegans Seven TM Receptor family member (str-96) (str-96) mRNA, complete cds. |
11/11 |
None |
T10H4.2 ENSEMBL |
cdna:known chromosome:CEL140:V:15295076:15296551:-1 gene:T10H4.2 |
11/11 |
None | |
SNAP00000030483 |
8/11 |
Cross Hyb Matching Probes |
None |
GENEFINDER00000030487 |
6/11 |
Cross Hyb Matching Probes |
None | |
Genomic Alignment of Consensus/Exemplar Sequence |
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Wormbase March 2004 |
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chrV:15295075-15296551(-) |
100.0 |
100.0 |
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Public Domain and Genome References |
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7TM receptor
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str-96
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T10H4.2
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188391 Entrez gene
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O18083 EMBL-EBI
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CE16387 Wormbase
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Functional Annotations |
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blast |
CAB03331 |
Hypothetical protein T10H4.2 [Caenorhabditis elegans] ref|NP_506789.1| Seven TM Receptor family member (str-96) [Caenorhabditis elegans] |
0.0 |
blast |
CAE71664 |
Hypothetical protein CBG18636 [Caenorhabditis briggsae] |
7.0E-88 |
blast |
CAE71668 |
Hypothetical protein CBG18640 [Caenorhabditis briggsae] |
2.0E-85 | |
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Pfam |
IPR003002 EMBL-EBI |
7TM chemoreceptor, subfamily 1 |
4.6E-12 |
Pfam |
IPR003002 EMBL-EBI |
7TM chemoreceptor, subfamily 1 |
3.5E-19 |
NP_506789.1 |
7 |
10-32,45-64,92-114,134-156,213-235,262-284,294-316 |
T10H4.2 |
7 |
10-32,45-64,92-114,134-156,213-235,262-284,294-316 | |
Sequence |
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>C. ELEGANS:188810_AT
ggaagcttactgcttggagcctgatgagtattcgtatgttggaccacaatatttctacga
acaccgcaaaattatcgattcgaatgaagaaatcagggagaagatcttccatcttccatc
tttccttggaatcgggatcattgccgttttaatggttggaattttggtttcttctgcttt
atttggagccgaaacttacaaaattctcaatgctcaaggactcgcatgctatgcagctaa
ggaactacagaagcagcttttcaaaactttggtaattcaaagctcgatcccgatgatctt
tatggttctaccgataacatgtatgttcttgcttccattttttggtgtcaaagttggaga
agttgcaaatttaatcccgatgtgtgcggcgatatacccatgtttgaatccaatgatcgc
catgattttcatcaaagatttcagtaatagaataattgaaatcatcacctgctctaaagg
acgacgcttcaaggttggcacgttgccagccagctccgccgataacacgaataca
BLASTn GenBank NR |
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GGAAGCTTACTGCTTGGAGCCTGAT |
410 |
531 |
528 |
Antisense |
TCCATCTTCCATCTTTCCTTGGAAT |
575 |
589 |
635 |
Antisense |
TTTTGGTTTCTTCTGCTTTATTTGG |
623 |
673 |
689 |
Antisense |
GCTCAAGGACTCGCATGCTATGCAG |
629 |
301 |
739 |
Antisense |
TGGTAATTCAAAGCTCGATCCCGAT |
23 |
553 |
797 |
Antisense |
CCCGATGATCTTTATGGTTCTACCG |
546 |
259 |
816 |
Antisense |
ACATGTATGTTCTTGCTTCCATTTT |
496 |
107 |
844 |
Antisense |
TGTGCGGCGATATACCCATGTTTGA |
88 |
557 |
910 |
Antisense |
CACCTGCTCTAAAGGACGACGCTTC |
503 |
201 |
993 |
Antisense |
GACGCTTCAAGGTTGGCACGTTGCC |
648 |
379 |
1010 |
Antisense |
CAGCTCCGCCGATAACACGAATACA |
585 |
201 |
1038 |
Antisense | |
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Affymetrix Proprietary Database |