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[188807_at] 7TM receptor

Description F16C3.1 /REP_DB=WormBase Gene ID /WP=CE09432 /TR=Q9XVQ0 /GB=CAB02968.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 32      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 62      6grp_total > 31      4grp_total > 21      6grp_highest_sub > 02      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 468
1 2 3 4 range
A 377.8
(1.4)
P 		438.8
(2.9)
P 		205.4
(-3)
P 		440.9
(3)
P 		236
B 584.6
(3)
P 		335.3
(-1.4)
P 		244
(-3)
P 		480.2
(1.2)
P 		341
C 438.2
(-0.2)
P 		366.6
(-1.2)
P 		235.4
(-3)
P 		672.9
(3)
P 		438
avr 466.9
(1.7) 		380.2
(0) 		228.3
(-3) 		531.3
(3) 		303

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 360
1 2 3 4 5 6 range
A 513.3
(1.9)
P 		564.7
(3)
P 		540
(2.5)
P 		463.1
(0.8)
P 		375.4
(-1.1)
P 		285.2
(-3)
P 		280
B 441.3
(-0.6)
P 		612.1
(3)
P 		573.3
(2.2)
P 		471.1
(0)
P 		367.5
(-2.2)
P 		327.4
(-3)
P 		285
C 438.4
(-0.6)
P 		645.1
(3)
P 		543.9
(1.2)
P 		571.3
(1.7)
P 		302.2
(-3)
P 		320.3
(-2.7)
P 		343
avr 464.3
(0.1) 		607.3
(3) 		552.4
(1.9) 		501.8
(0.9) 		348.4
(-2.2) 		311
(-3) 		296
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 137.6
(3)
P 		95.2
(-0)
P 		53.7
(-3)
P 		64.5
(-2.2)
P 		84
B 186.4
(3)
P 		82.8
(-1.8)
P 		56.5
(-3)
P 		102.3
(-0.9)
P 		130
C 145
(3)
P 		105.4
(-0.8)
P 		82
(-3)
P 		113.5
(0)
P 		63
avr 156.3
(3) 		94.5
(-1) 		64.1
(-3) 		93.4
(-1.1) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 94.6
(-1.8)
P 		200.8
(3)
P 		117.6
(-0.8)
P 		117.4
(-0.8)
P 		113.3
(-1)
P 		69.4
(-3)
P 		131
B 153.5
(-0.7)
P 		203.7
(3)
P 		139.2
(-1.7)
P 		124.8
(-2.8)
P 		149.3
(-1)
P 		122.1
(-3)
P 		82
C 162.5
(0.9)
P 		196.8
(3)
P 		138.4
(-0.5)
P 		114.9
(-2)
P 		97.8
(-3)
P 		107.2
(-2.4)
P 		99
avr 136.9
(-0.8) 		200.4
(3) 		131.7
(-1.1) 		119
(-1.8) 		120.1
(-1.8) 		99.6
(-3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188807_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.914
Sequence Type Exemplar sequence
Representative Public ID F16C3.1 NCBI
Target Description F16C3.1 /REP_DB=WormBase Gene ID /WP=CE09432 /TR=Q9XVQ0 /GB=CAB02968.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060271(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060271 NCBI Caenorhabditis elegans F16C3.1 (F16C3.1) mRNA, complete cds. 11/11 None
SNAP00000021300 ENSEMBL cdna:SNAP chromosome:CEL140:I:10155453:10158009:1 11/11 None
GENEFINDER00000021304 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10155453:10158009:1 11/11 None
F16C3.1 ENSEMBL cdna:known chromosome:CEL140:I:10155498:10158009:1 gene:F16C3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10155428-10157940(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Ensembl F16C3.1
Entrez Gene 184568 Entrez gene
SwissProt Q9XVQ0 EMBL-EBI
WormBase CE09432 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
5179 hormone activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02968 Hypothetical protein F16C3.1 [Caenorhabditis elegans] ref|NP_492672.1| F16C3.1 [Caenorhabditis elegans] 0.0
blast CAE66838 Hypothetical protein CBG12208 [Caenorhabditis briggsae] 0.0
blast CAE66838 Hypothetical protein CBG12208 [Caenorhabditis briggsae] 1.0E-176
blast AAA96121 Hypothetical protein C24B5.1 [Caenorhabditis elegans] ref|NP_505381.2| C24B5.1 [Caenorhabditis elegans] 9.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492672.1 7 26-45,57-79,102-124,144-166,197-219,299-321,336-358
F16C3.1 7 26-45,57-79,102-124,144-166,197-219,299-321,336-358
SNAP00000021300 7 41-60,72-94,117-139,159-181,212-234,314-336,351-373
GENEFINDER00000021304 7 41-60,72-94,117-139,159-181,212-234,314-336,351-373
Sequence
Target Sequence 
>C. ELEGANS:188807_AT
attacttcatgttcaccctcatggatacagctctttgcacacttcttccagcaattctca
tcatcattgtcaactcattctccacatatcggtatcgtcaatgcatgaaaatctactcgt
ctggcgtgctccgtgttcgatttgtgcgtgctccaacaactcaacaacagcagcaacaac
tcaacaatgataccattcaatttgaagagacaacagtgaaaaaatatcttctgagcacag
acaatacacattcaaatcttcccacgagttcaactcaatccagaaattgcggaaaacttc
gaagttctgatttacaattgagcagaacacttatcattgtcactagcacatttgttcttc
tgaatgtaccaagttatgcaatgcgtattcttcaatcaataatcagttcagctggaccat
tattcaattttgtatattatgttactttgctcatctattatttacatcatgctgttttat
tctatatgtacattttctggagtcctcaaatgaaaaaacaactgaaaccgacggcgatgc
gacttttggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTACTTCATGTTCACCCTCATGGA 404 13 590 Antisense
ATGGATACAGCTCTTTGCACACTTC 520 51 610 Antisense
TTGCACACTTCTTCCAGCAATTCTC 511 703 624 Antisense
ATCATTGTCAACTCATTCTCCACAT 177 31 652 Antisense
ATTCTCCACATATCGGTATCGTCAA 272 11 666 Antisense
TGAAAATCTACTCGTCTGGCGTGCT 384 573 695 Antisense
TTCGATTTGTGCGTGCTCCAACAAC 91 697 725 Antisense
TTCAAATCTTCCCACGAGTTCAACT 38 687 840 Antisense
GTCACTAGCACATTTGTTCTTCTGA 200 465 928 Antisense
TATGTACATTTTCTGGAGTCCTCAA 366 655 1074 Antisense
CCGACGGCGATGCGACTTTTGGAAT 697 263 1117 Antisense
Sequence Source Affymetrix Proprietary Database