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[188806_at] EGF domains

Description C05D12.2 /REP_DB=WormBase Gene ID /WP=CE02971 /TR=Q17657 /GB=CAA90754.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=EGF domains
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      6grp_highest_nonorm > 63      6grp_total > 84      4grp_total > 53      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 309.2
(2.8)
P 		316.6
(3)
A 		250.5
(0.8)
A 		137.6
(-3)
A 		179
B 317.4
(3)
P 		160.5
(-1.4)
P 		166.5
(-1.2)
P 		102.5
(-3)
A 		215
C 279
(0.9)
P 		355.4
(3)
A 		180.2
(-1.8)
M 		137.1
(-3)
M 		218
avr 301.9
(3) 		277.5
(2.2) 		199.1
(-0.5) 		125.7
(-3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 449.6
(-3)
P 		546.4
(-1.3)
P 		513.1
(-1.9)
P 		782
(3)
P 		748
(2.4)
P 		708.3
(1.7)
P 		332
B 546.4
(-1)
P 		557.7
(-0.7)
P 		461.1
(-3)
P 		670.3
(2)
P 		713.1
(3)
P 		673.1
(2)
P 		252
C 408.8
(-3)
P 		618.1
(0.4)
P 		639.1
(0.7)
P 		781.6
(3)
P 		631.6
(0.6)
P 		622.2
(0.4)
P 		373
avr 468.3
(-3) 		574.1
(-0.7) 		537.8
(-1.5) 		744.6
(3) 		697.6
(2) 		667.9
(1.3) 		276
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 112.6
(3)
P 		68.7
(0.2)
A 		65.5
(-0.1)
A 		20.1
(-3)
A 		93
B 101.2
(3)
P 		39.6
(-1.7)
P 		38.6
(-1.7)
P 		21.8
(-3)
A 		79
C 92.4
(2.3)
P 		102.2
(3)
A 		62.8
(0)
M 		23.1
(-3)
M 		79
avr 102.1
(3) 		70.2
(0.6) 		55.6
(-0.5) 		21.7
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 82.9
(-3)
P 		194.3
(1.7)
P 		111.7
(-1.8)
P 		198.3
(1.8)
P 		225.7
(3)
P 		172.4
(0.8)
P 		143
B 190.1
(-0.4)
P 		185.6
(-0.5)
P 		112
(-3)
P 		177.6
(-0.8)
P 		289.7
(3)
P 		251
(1.7)
P 		178
C 151.5
(-3)
P 		188.6
(0.9)
P 		162.6
(-1.8)
P 		157.2
(-2.4)
P 		204.4
(2.6)
P 		208.3
(3)
P 		57
avr 141.5
(-2.3) 		189.5
(0.3) 		128.8
(-3) 		177.7
(-0.4) 		239.9
(3) 		210.6
(1.4) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188806_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3662
Sequence Type Exemplar sequence
Representative Public ID C05D12.2 NCBI
Target Description C05D12.2 /REP_DB=WormBase Gene ID /WP=CE02971 /TR=Q17657 /GB=CAA90754.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=EGF domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064032 NCBI Caenorhabditis elegans C05D12.2 (C05D12.2) mRNA, complete cds. 11/11 None
SNAP00000031674 ENSEMBL cdna:SNAP chromosome:CEL140:II:11418219:11423265:1 11/11 None
GENEFINDER00000031685 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11418219:11430177:1 9/11 None
C05D12.2 ENSEMBL cdna:known chromosome:CEL140:II:11418219:11423286:1 gene:C05D12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11418215-11423262(+) 100.0 100.0
Public Domain and Genome References
Gene Title EGF domains
Ensembl C05D12.2
Entrez Gene 174741 Entrez gene
SwissProt Q17657 EMBL-EBI
WormBase CE32301 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90754 Hypothetical protein C05D12.2 [Caenorhabditis elegans] ref|NP_496433.2| C05D12.2 [Caenorhabditis elegans] 0.0
blast CAE59510 Hypothetical protein CBG02899 [Caenorhabditis briggsae] 0.0
blast CAH10768 Hypothetical protein C05D12.3 [Caenorhabditis elegans] ref|NP_001021920.1| C05D12.3 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:188806_AT
gctcttctgattcgatgccaatttatattccaatgaaagtcaccagtggaatcataccaa
cgaaaactatacccagactgggacatcaaccagtgaactacaaaaagttagcagttgctc
gacgagatgccagttcgtgctcttacaattttatctcggatagtgtagtggtgcctaaaa
ctgaactcacaacgtggacagtctcagctgaaagtgttggaaagcttgttcttcacagaa
tcttccactactatcaacatcttccagcagattcttccgtctgccaaggaggaaatgtgg
ataagtttggaagatgcatatgcccatccagatacactggggattattgttgggatagga
tttgtcatcctcctgccacatattcgtttggaatttgcagttgtcctccggggttttatg
gagatttttgtgaaattatgcttgtgctcccaaagaacggctcaatactggtccgaacta
cta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTTCTGATTCGATGCCAATTTA 369 301 2528 Antisense
GCCAGTTCGTGCTCTTACAATTTTA 528 275 2656 Antisense
CTCACAACGTGGACAGTCTCAGCTG 120 229 2713 Antisense
GCTTGTTCTTCACAGAATCTTCCAC 629 303 2751 Antisense
GAATCTTCCACTACTATCAACATCT 209 329 2765 Antisense
GATTCTTCCGTCTGCCAAGGAGGAA 212 419 2797 Antisense
ATGCATATGCCCATCCAGATACACT 401 41 2841 Antisense
GGATAGGATTTGTCATCCTCCTGCC 161 509 2880 Antisense
TCCTCCTGCCACATATTCGTTTGGA 440 593 2895 Antisense
TATGCTTGTGCTCCCAAAGAACGGC 227 655 2964 Antisense
GGCTCAATACTGGTCCGAACTACTA 541 537 2986 Antisense
Sequence Source Affymetrix Proprietary Database