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[188805_at]

Description C55F2.1 /REP_DB=WormBase Gene ID /WP=CE26363 /TR=Q9GYQ3 /GB=AAF99903.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=transferase
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 55      6grp_total > 64      4grp_total > 0      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 969
1 2 3 4 range
A 842.9
(-1.9)
P 		658.5
(-3)
P 		855.7
(-1.8)
P 		1627.3
(3)
P 		969
B 835.6
(-2.2)
P 		757.2
(-3)
P 		999.5
(-0.5)
P 		1348.3
(3)
P 		591
C 867.7
(-1.9)
P 		753.7
(-3)
P 		899.9
(-1.6)
P 		1390.7
(3)
P 		637
avr 848.7
(-2) 		723.1
(-3) 		918.4
(-1.4) 		1455.4
(3) 		732

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1827
1 2 3 4 5 6 range
A 565.5
(-3)
P 		1510.5
(0.1)
P 		2392.9
(3)
P 		2152.5
(2.2)
P 		1513.7
(0.1)
P 		2025.2
(1.8)
P 		1827
B 666.3
(-3)
P 		1317
(-0.4)
P 		2144.9
(3)
P 		1804.1
(1.6)
P 		1585.7
(0.7)
P 		1824.4
(1.7)
P 		1479
C 663.6
(-3)
P 		1296.6
(-0.7)
P 		2310.5
(3)
P 		1611.4
(0.5)
P 		1610.9
(0.5)
P 		1794.7
(1.1)
P 		1647
avr 631.8
(-3) 		1374.7
(-0.3) 		2282.8
(3) 		1856
(1.4) 		1570.1
(0.4) 		1881.4
(1.5) 		1651
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 306.9
(3)
P 		142.9
(-3)
P 		223.7
(-0)
P 		238.2
(0.5)
P 		164
B 266.5
(1.8)
P 		187
(-3)
P 		231.6
(-0.3)
P 		287.3
(3)
P 		100
C 287.2
(1.4)
P 		216.7
(-3)
P 		313.6
(3)
P 		234.5
(-1.9)
P 		97
avr 286.9
(3) 		182.2
(-3) 		256.3
(1.2) 		253.3
(1.1) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 576
1 2 3 4 5 6 range
A 104.3
(-3)
P 		537.2
(2.9)
P 		521.1
(2.7)
P 		545.9
(3)
P 		456.8
(1.8)
P 		493.1
(2.3)
P 		442
B 231.9
(-3)
P 		438.4
(-0.2)
P 		520.8
(0.9)
P 		477.9
(0.3)
P 		644.3
(2.5)
P 		680.3
(3)
P 		448
C 246
(-3)
P 		395.6
(-0.5)
P 		588.1
(2.8)
P 		324.1
(-1.7)
P 		521.3
(1.7)
P 		600.8
(3)
P 		355
avr 194.1
(-3) 		457.1
(1) 		543.3
(2.3) 		449.3
(0.9) 		540.8
(2.2) 		591.4
(3) 		397
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188805_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8572
Sequence Type Exemplar sequence
Representative Public ID C55F2.1 NCBI
Target Description C55F2.1 /REP_DB=WormBase Gene ID /WP=CE26363 /TR=Q9GYQ3 /GB=AAF99903.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171912(11), NM_171387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171912 NCBI Caenorhabditis elegans C55F2.1b (transferase) mRNA, complete cds. 11/11 None
NM_171387 NCBI Caenorhabditis elegans C55F2.1a (transferase) mRNA, complete cds. 11/11 None
C55F2.1b.2 ENSEMBL cdna:known chromosome:CEL140:IV:7881585:7900225:1 gene:C55F2.1 11/11 None
C55F2.1b.1 ENSEMBL cdna:known chromosome:CEL140:IV:7882011:7900229:1 gene:C55F2.1 11/11 None
C55F2.1a ENSEMBL cdna:known chromosome:CEL140:IV:7892648:7900098:1 gene:C55F2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027930 5/11 Cross Hyb Matching Probes None
SNAP00000028663 8/11 Cross Hyb Matching Probes None
GENEFINDER00000028687 8/11 Cross Hyb Matching Probes None
SNAP00000037524 3/11 Cross Hyb Matching Probes None
GENEFINDER00000037530 3/11 Cross Hyb Matching Probes None
C55F2.1c 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177576 3 2 NM_171387 188805_at (11)
NM_171912 188805_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7891344-7900104(+) 100.0 100.0
Public Domain and Genome References
Ensembl C55F2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL27234 Hypothetical protein C55F2.1b [Caenorhabditis elegans] ref|NP_741452.2| C55F2.1b [Caenorhabditis elegans] 0.0
blast CAE70902 Hypothetical protein CBG17698 [Caenorhabditis briggsae] 0.0
blast AAL27233 Hypothetical protein C55F2.1a [Caenorhabditis elegans] ref|NP_741451.2| C55F2.1a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002695 EMBL-EBI AICARFT/IMPCHase bienzyme 1.0E-126
Pfam IPR004362 EMBL-EBI Methylglyoxal synthase-like domain 7.9E-48
Pfam IPR002695 EMBL-EBI AICARFT/IMPCHase bienzyme 4.1E-35
Pfam IPR002695 EMBL-EBI AICARFT/IMPCHase bienzyme 1.5E-41
Pfam IPR002695 EMBL-EBI AICARFT/IMPCHase bienzyme 4.4E-29
Sequence
Target Sequence 
>C. ELEGANS:188805_AT
aacagtgtttgctttgctcatcgaggacaggtcattggaatgggagcaggtcaacaatct
cgaatccattgtacgagacttgctggagacaaagcaatgaattggtggctacgacaacat
ccaacagtactctcacttccatggaagaatgcaattaaacgatcagagaaatcaaatgct
attgatgttttatgcagtggagttcttggttcagagattgccatcgaccaatggcagcaa
tatttcaatgagccagtggagccacttgctgaggatgatcgcaaacaatggctgagccag
caaacaggagttgtgatgagttcagatgcattccttccattccgtgataatgttgattgt
gctaaacagttcggagtgtcttatgttgctcatccaggaggctcagttcgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAGTGTTTGCTTTGCTCATCGAG 233 137 1021 Antisense
GCAGGTCAACAATCTCGAATCCATT 102 311 1066 Antisense
CGAATCCATTGTACGAGACTTGCTG 674 253 1081 Antisense
CGACAACATCCAACAGTACTCTCAC 8 253 1132 Antisense
TATGCAGTGGAGTTCTTGGTTCAGA 443 655 1211 Antisense
GGTTCAGAGATTGCCATCGACCAAT 624 505 1228 Antisense
GGAGCCACTTGCTGAGGATGATCGC 387 521 1278 Antisense
TGATCGCAAACAATGGCTGAGCCAG 446 565 1296 Antisense
GCATTCCTTCCATTCCGTGATAATG 669 307 1348 Antisense
GAGTGTCTTATGTTGCTCATCCAGG 464 401 1394 Antisense
CTCATCCAGGAGGCTCAGTTCGTGA 452 229 1409 Antisense
Sequence Source Affymetrix Proprietary Database