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[188799_at] 7TM receptor

Description F22B8.1 /REP_DB=WormBase Gene ID /WP=CE15880 /TR=O17830 /GB=CAB05493.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 11      4grp_total > 20      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 3.2
(-2.7)
A 		18
(0.1)
A 		1.7
(-3)
A 		32.8
(3)
A 		31
B 5.1
(-1.9)
A 		9.2
(-0.4)
A 		2.2
(-3)
A 		18.1
(3)
A 		16
C 23
(0.4)
A 		5.5
(-2.3)
A 		1.1
(-3)
A 		40.2
(3)
A 		39
avr 10.4
(-1.2) 		10.9
(-1.1) 		1.7
(-3) 		30.4
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 42.4
(3)
A 		5
(-3)
A 		37.4
(2.2)
A 		7.7
(-2.6)
A 		20.4
(-0.5)
A 		8
(-2.5)
A 		37
B 5.9
(-3)
A 		33.9
(3)
A 		23.3
(0.7)
A 		6.9
(-2.8)
A 		10.5
(-2)
A 		20.6
(0.2)
A 		28
C 1.5
(-3)
A 		39.2
(3)
A 		3.9
(-2.6)
A 		2.2
(-2.9)
A 		2.1
(-2.9)
A 		6.9
(-2.1)
A 		38
avr 16.6
(0.2) 		26
(3) 		21.5
(1.7) 		5.6
(-3) 		11
(-1.4) 		11.8
(-1.2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.2
(-1.9)
A 		3.9
(1.8)
A 		0.4
(-3)
A 		4.8
(3)
A 		4
B 1.6
(-1)
A 		2.3
(0.3)
A 		0.5
(-3)
A 		3.8
(3)
A 		3
C 7.6
(3)
A 		1.6
(-2)
A 		0.4
(-3)
A 		6.8
(2.3)
A 		7
avr 3.5
(1) 		2.6
(-0.2) 		0.4
(-3) 		5.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.8
(2.6)
A 		1.8
(-3)
A 		8.2
(3)
A 		2
(-2.8)
A 		6.2
(1.1)
A 		1.9
(-2.9)
A 		6
B 2
(-2.9)
A 		11.3
(3)
A 		5.7
(-0.5)
A 		1.8
(-3)
A 		4.2
(-1.5)
A 		7.7
(0.7)
A 		10
C 0.6
(-2.9)
A 		12
(3)
A 		1
(-2.7)
A 		0.4
(-3)
A 		0.7
(-2.8)
A 		2.3
(-2)
A 		12
avr 3.5
(-1.2) 		8.4
(3) 		5
(0.1) 		1.4
(-3) 		3.7
(-1) 		4
(-0.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188799_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13750
Sequence Type Exemplar sequence
Representative Public ID F22B8.1 NCBI
Target Description F22B8.1 /REP_DB=WormBase Gene ID /WP=CE15880 /TR=O17830 /GB=CAB05493.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074647 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-29) (srj-29) mRNA, complete cds. 11/11 None
F22B8.1 ENSEMBL cdna:known chromosome:CEL140:V:16078242:16079891:1 gene:F22B8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002262 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16078241-16079891(+) 95.37 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol srj-29
Ensembl F22B8.1
Entrez Gene 184821 Entrez gene
SwissProt O17830 EMBL-EBI
WormBase CE15880 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05493 Hypothetical protein F22B8.1 [Caenorhabditis elegans] ref|NP_507048.1| Serpentine Receptor, class J family member (srj-29) [Caenorhabditis elegans] 0.0
blast CAB03267 Hypothetical protein T01G5.3 [Caenorhabditis elegans] ref|NP_506730.1| Serpentine Receptor, class J family member (srj-27) [Caenorhabditis elegans] 1.0E-85
blast CAB16551 Hypothetical protein ZK262.10 [Caenorhabditis elegans] ref|NP_507604.1| Serpentine Receptor, class J family member (srj-26) [Caenorhabditis elegans] 1.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507048.1 6 70-92,102-124,145-167,214-236,257-279,299-321
F22B8.1 6 70-92,102-124,145-167,214-236,257-279,299-321
Sequence
Target Sequence 
>C. ELEGANS:188799_AT
ggttttacatttacgatggcctacttctggatggtggctgatactgagcggttgacatat
atgcaaaatattttcctggaagagtttaaccaaaatgtcgatgatttgaatatttttatt
gtgatttaccatgagactagtccagctgttttgtggaagtcttggagtgcaatactgata
ttaactacgttatccgtaatttctctggtgataaattcaattttcagtattttaatcatt
acaaaactgaaaagtgaaaatttgtcaatgagcaacactacaaaacgtctgcagaaacaa
ttgataaaagctctgatcactcaatcaactattccaattcttgtatgctttactccatgc
ttaattagttggtatcttccagtttttggcattgatattggaaatgggatacattgggct
ttgtcggtggctctgtcattttttccagttctggacccgctttcattatttttcttctta
ccaatatttggagtgagattgcgagagatttttggaattaaacgtagagttgcaatacga
acgactgatgggacgttgcacgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTTACATTTACGATGGCCTACT 159 507 481 Antisense
GATGGCCTACTTCTGGATGGTGGCT 108 407 495 Antisense
GGTGGCTGATACTGAGCGGTTGACA 411 495 513 Antisense
ATGAGACTAGTCCAGCTGTTTTGTG 694 45 611 Antisense
TACGTTATCCGTAATTTCTCTGGTG 135 647 666 Antisense
GATCACTCAATCAACTATTCCAATT 644 421 795 Antisense
TCTTGTATGCTTTACTCCATGCTTA 349 619 819 Antisense
GGTATCTTCCAGTTTTTGGCATTGA 322 505 851 Antisense
GATACATTGGGCTTTGTCGGTGGCT 165 423 888 Antisense
TGGCTCTGTCATTTTTTCCAGTTCT 594 543 908 Antisense
ACGACTGATGGGACGTTGCACGAAG 446 91 1021 Antisense
Sequence Source Affymetrix Proprietary Database