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[188798_at] 7TM receptor

Description T23D5.9 /REP_DB=WormBase Gene ID /WP=CE21194 /TR=O45807 /GB=CAB04821.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 56      4grp_total > 26      6grp_cgc > 28      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 1.9
(-3)
A 		17.8
(3)
A 		4.5
(-2)
A 		3.9
(-2.2)
A 		16
B 2.9
(-3)
A 		34.2
(3)
A 		17.7
(-0.2)
A 		18.9
(0.1)
A 		31
C 7.7
(-3)
A 		27.3
(-1)
A 		20.4
(-1.7)
A 		66.8
(3)
A 		59
avr 4.2
(-3) 		26.4
(2.2) 		14.2
(-0.7) 		29.9
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 7.5
(-1.6)
A 		5.5
(-2.1)
A 		1.9
(-3)
A 		2.3
(-2.9)
A 		6.4
(-1.9)
A 		26.7
(3)
A 		25
B 15.9
(0.8)
A 		9.6
(-1)
A 		13.5
(0.1)
A 		2.2
(-3)
A 		11.5
(-0.4)
A 		24
(3)
A 		22
C 14.4
(-0.2)
A 		24.3
(3)
A 		21.5
(2.1)
A 		5.5
(-3)
A 		6
(-2.8)
A 		20.3
(1.7)
A 		19
avr 12.6
(-0.3) 		13.1
(-0.1) 		12.3
(-0.4) 		3.3
(-3) 		8
(-1.6) 		23.7
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.7
(-2.8)
A 		3.9
(3)
A 		1.2
(-1.9)
A 		0.6
(-3)
A 		3
B 0.9
(-3)
A 		8.4
(3)
A 		4.1
(-0.4)
A 		4
(-0.5)
A 		8
C 2.5
(-3)
A 		7.8
(0.6)
A 		7.1
(0.1)
A 		11.3
(3)
A 		9
avr 1.4
(-3) 		6.7
(3) 		4.1
(0.1) 		5.3
(1.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.4
(-2)
A 		2
(-1.4)
A 		0.4
(-3)
A 		0.6
(-2.8)
A 		1.9
(-1.5)
A 		6.5
(3)
A 		6
B 5.5
(0.5)
A 		3.2
(-1.1)
A 		3.3
(-1.1)
A 		0.6
(-3)
A 		4.7
(-0.1)
A 		9
(3)
A 		8
C 5.3
(1)
A 		7.4
(3)
A 		5.5
(1.2)
A 		1.1
(-3)
A 		2
(-2.1)
A 		6.8
(2.4)
A 		6
avr 4.1
(-0) 		4.2
(0.1) 		3.1
(-0.9) 		0.8
(-3) 		2.9
(-1.1) 		7.4
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188798_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14216
Sequence Type Exemplar sequence
Representative Public ID T23D5.9 NCBI
Target Description T23D5.9 /REP_DB=WormBase Gene ID /WP=CE21194 /TR=O45807 /GB=CAB04821.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074522(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074522 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-43) (str-43) mRNA, complete cds. 11/11 None
GENEFINDER00000041601 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15752750:15754733:-1 11/11 None
T23D5.9 ENSEMBL cdna:known chromosome:CEL140:V:15753516:15754733:-1 gene:T23D5.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041593 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15753515-15754733(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-43
Ensembl T23D5.9
Entrez Gene 188788 Entrez gene
SwissProt O45807 EMBL-EBI
WormBase CE21194 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04821 Hypothetical protein T23D5.9 [Caenorhabditis elegans] ref|NP_506923.1| Seven TM Receptor family member (str-43) [Caenorhabditis elegans] 0.0
blast NP_501131 Seven TM Receptor family member (str-44) [Caenorhabditis elegans] gb|AAA83346.2| Seven tm receptor protein 44 [Caenorhabditis elegans] 1.0E-132
blast CAE61826 Hypothetical protein CBG05796 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506923.1 7 10-32,45-67,87-109,129-151,198-220,247-269,284-306
T23D5.9 7 10-32,45-67,87-109,129-151,198-220,247-269,284-306
GENEFINDER00000041601 7 10-32,45-67,87-109,129-151,198-220,247-269,284-306
Sequence
Target Sequence 
>C. ELEGANS:188798_AT
gctgcactgggccattttgggcatcctgatgattattctgatgattacatgagtgaaccg
gttcaaaaaatgtacaactacagtattacttccttgccacgtttcccgatcatcccttac
gcggcagatggatctgtgagatggaacaatatctactttctaattattggagtgttcatc
ataaacatacaatatgttataatactttatttcggtgtccgcatgcgtacaatccttaag
aacgagctccaacaacaatcaattgtgaatcaaaaacttcaaaagcaattctttaaagct
cttgtagtacaaactgttgttccaacattattttttgtactgccaattgctcctattcta
attgccccgttatttgaaccactaatcacaattaagatgaacctaccatctgggtgggtg
tatgtcattgtgagtatgttcccacctgttgatacaattgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCACTGGGCCATTTTGGGCATC 276 297 454 Antisense
ACTACAGTATTACTTCCTTGCCACG 290 101 530 Antisense
ATCATCCCTTACGCGGCAGATGGAT 419 29 562 Antisense
TAATACTTTATTTCGGTGTCCGCAT 552 633 653 Antisense
GTGTCCGCATGCGTACAATCCTTAA 38 487 668 Antisense
CAATCCTTAAGAACGAGCTCCAACA 391 181 683 Antisense
TTTTGTACTGCCAATTGCTCCTATT 188 679 786 Antisense
TAATTGCCCCGTTATTTGAACCACT 677 633 812 Antisense
GAACCTACCATCTGGGTGGGTGTAT 408 323 852 Antisense
GTCATTGTGAGTATGTTCCCACCTG 455 467 877 Antisense
TTCCCACCTGTTGATACAATTGCTT 321 697 892 Antisense
Sequence Source Affymetrix Proprietary Database