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[188795_at] 7tm receptor

Description C56A3.3 /REP_DB=WormBase Gene ID /WP=CE09031 /TR=Q18876 /GB=CAB01134.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7tm receptor
Cluster 6grp_total > 16      4grp_total > 13      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 144.5
(2.1)
P 		77.6
(-1.7)
A 		55.3
(-3)
A 		159.9
(3)
P 		105
B 154
(2.4)
P 		93.6
(-1.7)
A 		74.3
(-3)
A 		163.2
(3)
P 		89
C 136.5
(-0.7)
P 		72.8
(-2.6)
A 		60.4
(-3)
A 		258.8
(3)
P 		198
avr 145
(0.8) 		81.3
(-2.2) 		63.3
(-3) 		194
(3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 135.3
(3)
P 		61.4
(-1.4)
A 		90.6
(0.4)
P 		33.7
(-3)
A 		57.8
(-1.6)
A 		51.4
(-2)
A 		102
B 165.1
(3)
P 		112.8
(0.7)
P 		48.5
(-2)
A 		25.7
(-3)
A 		53.4
(-1.8)
A 		46.8
(-2.1)
A 		139
C 76.5
(-0.1)
P 		126.1
(3)
P 		28.8
(-3)
A 		66.8
(-0.7)
A 		65.1
(-0.8)
A 		66.2
(-0.7)
P 		97
avr 125.6
(3) 		100.1
(1.2) 		56
(-2) 		42.1
(-3) 		58.8
(-1.8) 		54.8
(-2.1) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 52.6
(3)
P 		16.8
(-2.6)
A 		14.4
(-3)
A 		23.4
(-1.6)
P 		38
B 49.1
(3)
P 		23.1
(-1.9)
A 		17.2
(-3)
A 		34.8
(0.3)
P 		32
C 45.2
(3)
P 		20.9
(-3)
A 		21.1
(-3)
A 		43.6
(2.6)
P 		24
avr 49
(3) 		20.3
(-2.5) 		17.6
(-3) 		33.9
(0.1) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 24.9
(3)
P 		21.8
(1.9)
A 		19.7
(1.1)
P 		8.5
(-3)
A 		17.4
(0.3)
A 		12.5
(-1.5)
A 		16
B 57.4
(3)
P 		37.6
(0.7)
P 		11.8
(-2.4)
A 		6.8
(-3)
A 		21.7
(-1.2)
A 		17.4
(-1.7)
A 		51
C 28.3
(1)
P 		38.5
(3)
P 		7.3
(-3)
A 		13.4
(-1.8)
A 		21.1
(-0.3)
A 		22.2
(-0.1)
P 		31
avr 36.9
(3) 		32.6
(2.1) 		12.9
(-2.3) 		9.6
(-3) 		20.1
(-0.7) 		17.4
(-1.3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188795_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14056
Sequence Type Exemplar sequence
Representative Public ID C56A3.3 NCBI
Target Description C56A3.3 /REP_DB=WormBase Gene ID /WP=CE09031 /TR=Q18876 /GB=CAB01134.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7tm receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073952(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073952 NCBI Caenorhabditis elegans C56A3.3 (C56A3.3) mRNA, complete cds. 11/11 None
SNAP00000001394 ENSEMBL cdna:SNAP chromosome:CEL140:V:13534618:13537203:-1 11/11 None
GENEFINDER00000001400 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13534618:13537203:-1 11/11 None
C56A3.3 ENSEMBL cdna:known chromosome:CEL140:V:13534821:13537203:-1 gene:C56A3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13534820-13537203(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7tm receptor
Ensembl C56A3.3
Entrez Gene 183856 Entrez gene
SwissProt Q18876 EMBL-EBI
WormBase CE09031 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01134 Hypothetical protein C56A3.3 [Caenorhabditis elegans] ref|NP_506353.1| C56A3.3 [Caenorhabditis elegans] 0.0
blast CAE62569 Hypothetical protein CBG06682 [Caenorhabditis briggsae] 0.0
blast CAA94616 Hypothetical protein T14C1.1 [Caenorhabditis elegans] ref|NP_510400.2| T14C1.1 [Caenorhabditis elegans] 6.0E-46
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506353.1 7 36-58,70-92,112-134,155-174,206-228,252-274,294-311
C56A3.3 7 36-58,70-92,112-134,155-174,206-228,252-274,294-311
SNAP00000001394 7 36-58,70-92,112-134,155-174,206-228,252-274,294-311
GENEFINDER00000001400 7 36-58,70-92,112-134,155-174,206-228,252-274,294-311
Sequence
Target Sequence 
>C. ELEGANS:188795_AT
ggcttgtaatactttggctcttgtagtaaactttatcgaaaacttcactgagccatcgcc
ggttctgctaaactttttgtcagacaccagtaacttcttagttgtgttcaactcttcagt
caattgcattatctattttatttttaacacagactacagagatgttttcctaatatactg
gaagaagctgaaaagagttttaatcgaggagtattgctgttgttgtgtaccagccggctc
acgtaactactcagcttatcagccagtttccacaagactcgttatcgaaaagagtcaaaa
tggaagcagtagtacaaaattgattctaccatcacttgatctgaatagaagtgatcaagc
cagttttgcagaatctgaaagtgcagcatccccaatctggcaacccttaaccacgagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTTGTAATACTTTGGCTCTTGTA 522 537 798 Antisense
TCGAAAACTTCACTGAGCCATCGCC 667 599 833 Antisense
TCGCCGGTTCTGCTAAACTTTTTGT 197 595 853 Antisense
GTCAGACACCAGTAACTTCTTAGTT 415 465 876 Antisense
GTGTTCAACTCTTCAGTCAATTGCA 598 485 901 Antisense
TGCTGTTGTTGTGTACCAGCCGGCT 162 581 1012 Antisense
GGCTCACGTAACTACTCAGCTTATC 676 537 1033 Antisense
GCTTATCAGCCAGTTTCCACAAGAC 127 305 1051 Antisense
GATTCTACCATCACTTGATCTGAAT 486 431 1119 Antisense
ATCTGAAAGTGCAGCATCCCCAATC 337 33 1170 Antisense
TCTGGCAACCCTTAACCACGAGAAA 692 605 1193 Antisense
Sequence Source Affymetrix Proprietary Database