[Home] | [Total List]

[188794_at] 7TM receptor

Description T23D5.7 /REP_DB=WormBase Gene ID /WP=CE16447 /TR=O45806 /GB=CAB04818.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 4grp_high_8_8 > 13      6grp_total > 79      4grp_total > 11      6grp_cgc > 29      6grp_cgc_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 85.2
(-1.9)
P 		55.1
(-3)
P 		78
(-2.1)
A 		216.2
(3)
P 		161
B 82.3
(-2.1)
P 		96
(-1.5)
P 		62.5
(-3)
P 		197.4
(3)
P 		135
C 72.1
(-1.7)
P 		83.7
(-1.2)
A 		35.3
(-3)
P 		199.8
(3)
P 		165
avr 79.9
(-2.1) 		78.3
(-2.2) 		58.6
(-3) 		204.5
(3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 21.9
(-3)
A 		26.8
(-2.4)
A 		40.4
(-0.9)
A 		35.6
(-1.4)
A 		57.2
(1)
A 		74.5
(3)
P 		53
B 40.8
(-0.9)
A 		71.3
(2)
P 		42.1
(-0.8)
A 		18.2
(-3)
A 		49
(-0.1)
P 		82.3
(3)
P 		64
C 44.3
(0.5)
A 		60.2
(2.6)
A 		17.6
(-3)
A 		44.7
(0.5)
A 		44.3
(0.5)
A 		63.5
(3)
P 		46
avr 35.7
(-2.6) 		52.8
(-0) 		33.4
(-2.9) 		32.8
(-3) 		50.2
(-0.4) 		73.4
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 31
(2.8)
P 		11.9
(-3)
P 		20.4
(-0.4)
A 		31.6
(3)
P 		20
B 26.2
(-0.5)
P 		23.7
(-1)
P 		14.5
(-3)
P 		42.1
(3)
P 		28
C 23.9
(0.3)
P 		24.1
(0.3)
A 		12.3
(-3)
P 		33.7
(3)
P 		21
avr 27
(0.4) 		19.9
(-1.7) 		15.7
(-3) 		35.8
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 4
(-3)
A 		9.5
(-0.7)
A 		8.8
(-1)
A 		9
(-0.9)
A 		17.3
(2.7)
A 		18.1
(3)
P 		14
B 14.2
(-0.8)
A 		23.7
(1.4)
P 		10.2
(-1.7)
A 		4.8
(-3)
A 		19.9
(0.5)
P 		30.7
(3)
P 		26
C 16.4
(1.3)
A 		18.4
(2)
A 		4.5
(-3)
A 		9
(-1.4)
A 		14.3
(0.5)
A 		21.3
(3)
P 		17
avr 11.5
(-1.5) 		17.2
(0.6) 		7.8
(-2.9) 		7.6
(-3) 		17.2
(0.6) 		23.4
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188794_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13663
Sequence Type Exemplar sequence
Representative Public ID T23D5.7 NCBI
Target Description T23D5.7 /REP_DB=WormBase Gene ID /WP=CE16447 /TR=O45806 /GB=CAB04818.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074519(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074519 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-19) (str-19) mRNA, complete cds. 10/11 None
SNAP00000041589 ENSEMBL cdna:SNAP chromosome:CEL140:V:15745801:15747041:-1 9/11 None
T23D5.7 ENSEMBL cdna:known chromosome:CEL140:V:15745844:15747041:-1 gene:T23D5.7 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000041598 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15745843-15747041(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-19
Ensembl T23D5.7
Entrez Gene 188786 Entrez gene
SwissProt O45806 EMBL-EBI
WormBase CE36206 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04818 Hypothetical protein T23D5.7 [Caenorhabditis elegans] ref|NP_506920.2| Seven TM Receptor family member (str-19) [Caenorhabditis elegans] 0.0
blast CAB04818 Hypothetical protein T23D5.7 [Caenorhabditis elegans] ref|NP_506920.2| Seven TM Receptor family member (str-19) [Caenorhabditis elegans] 1.0E-161
blast CAB04817 Hypothetical protein T23D5.6 [Caenorhabditis elegans] ref|NP_506919.1| Seven TM Receptor family member (str-18) [Caenorhabditis elegans] 1.0E-134
blast AAC69234 Seven tm receptor protein 16 [Caenorhabditis elegans] ref|NP_503887.1| Seven TM Receptor family member (str-16) [Caenorhabditis elegans] 1.0E-124
blast CAB04817 Hypothetical protein T23D5.6 [Caenorhabditis elegans] ref|NP_506919.1| Seven TM Receptor family member (str-18) [Caenorhabditis elegans] 1.0E-124
blast AAC69234 Seven tm receptor protein 16 [Caenorhabditis elegans] ref|NP_503887.1| Seven TM Receptor family member (str-16) [Caenorhabditis elegans] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.2E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.2E-10
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.2E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506920.2 7 10-32,44-66,91-113,126-148,207-229,249-271,286-308
T23D5.7 7 10-32,44-66,91-113,126-148,207-229,249-271,286-308
SNAP00000041589 7 10-32,44-66,91-113,126-148,193-215,235-257,272-294
Sequence
Target Sequence 
>C. ELEGANS:188794_AT
atatttctcaagtcccgtgtgtgataaatttgatatatcaaaaccttcccaactccaccg
atacattcatccgatggcggtgtgtcatgtgtacacttaatatgacattcatcatgattg
tccaatatggggtgatgatattctgtggatcacacttgtattttgaaatggaggagaaac
taaaaatggtgtcggatcaggaaagaaagcttcacaagcaaatattcaagacattgatgc
ttcaaatcactacaccaacaattgtcttgttctctccgatcatctacatcatctccgtac
catttttcaacattgaagttagtgtccctacaggagtatttctatctgtttttactctat
accctgctctcgacgcgttcatcattatgtatgtaatcactgattacagaaaagcaattc
taagtgagttccgatataattttagatctttcaaaatccttgaaaatttagagattctta
gaagatcaggttcgggcagtgttacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTTCTCAAGTCCCGTGTGTGAT 488 19 443 Antisense
TCCACCGATACATTCATCCGATGGC 483 587 496 Antisense
ATCCGATGGCGGTGTGTCATGTGTA 405 39 511 Antisense
ATGCTTCAAATCACTACACCAACAA 413 43 679 Antisense
CAACAATTGTCTTGTTCTCTCCGAT 33 191 698 Antisense
TCATCTCCGTACCATTTTTCAACAT 281 619 731 Antisense
GAAGTTAGTGTCCCTACAGGAGTAT 259 337 757 Antisense
CTATCTGTTTTTACTCTATACCCTG 205 225 784 Antisense
CTCTCGACGCGTTCATCATTATGTA 226 231 809 Antisense
AAGCAATTCTAAGTGAGTTCCGATA 485 151 854 Antisense
GATCAGGTTCGGGCAGTGTTACACA 328 421 926 Antisense
Sequence Source Affymetrix Proprietary Database