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[188793_at] peroxidase

Description R08F11.7 /REP_DB=WormBase Gene ID /WP=CE12592 /TR=O01892 /GB=AAB54249.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=peroxidase
Cluster 6grp_total > 08      4grp_total > 47      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 525
1 2 3 4 range
A 483.2
(3)
P 		32.3
(-2.6)
A 		9
(-2.9)
A 		3.8
(-3)
A 		479
B 529
(3)
P 		24.7
(-2.8)
A 		23.5
(-2.8)
A 		5.4
(-3)
A 		524
C 445.4
(3)
P 		21.6
(-2.8)
A 		6.5
(-3)
A 		5.3
(-3)
A 		440
avr 485.9
(3) 		26.2
(-2.7) 		13
(-2.9) 		4.8
(-3) 		481

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 16.8
(3)
A 		5.7
(-2)
A 		5.5
(-2.1)
A 		4
(-2.8)
A 		7.8
(-1.1)
A 		3.5
(-3)
A 		13
B 8
(3)
A 		6.7
(1.7)
A 		6.1
(1.1)
A 		4.5
(-0.5)
A 		4.7
(-0.3)
A 		2
(-3)
A 		6
C 27.7
(3)
A 		4.7
(-2.7)
A 		5.8
(-2.4)
A 		3.9
(-2.9)
A 		7.3
(-2)
A 		3.3
(-3)
A 		24
avr 17.5
(3) 		5.7
(-1.8) 		5.8
(-1.8) 		4.1
(-2.5) 		6.6
(-1.5) 		2.9
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 175.9
(3)
P 		7
(-2.8)
A 		2.4
(-2.9)
A 		0.6
(-3)
A 		175
B 168.7
(3)
P 		6.1
(-2.8)
A 		5.4
(-2.8)
A 		1.1
(-3)
A 		168
C 147.4
(3)
P 		6.2
(-2.8)
A 		2.3
(-2.9)
A 		0.9
(-3)
A 		147
avr 164
(3) 		6.4
(-2.8) 		3.4
(-2.9) 		0.9
(-3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.1
(3)
A 		2
(0.1)
A 		1.2
(-2)
A 		1
(-2.5)
A 		2.4
(1.2)
A 		0.8
(-3)
A 		2
B 2.8
(3)
A 		2.2
(1.3)
A 		1.5
(-0.7)
A 		1.2
(-1.6)
A 		1.9
(0.4)
A 		0.7
(-3)
A 		2
C 10.3
(3)
A 		1.4
(-2.6)
A 		1.5
(-2.6)
A 		0.8
(-3)
A 		2.4
(-2)
A 		1.1
(-2.8)
A 		10
avr 5.4
(3) 		1.9
(-1.7) 		1.4
(-2.3) 		1
(-2.9) 		2.2
(-1.3) 		0.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188793_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15245
Sequence Type Exemplar sequence
Representative Public ID R08F11.7 NCBI
Target Description R08F11.7 /REP_DB=WormBase Gene ID /WP=CE12592 /TR=O01892 /GB=AAB54249.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=peroxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071647 NCBI Caenorhabditis elegans R08F11.7 (peroxidase) mRNA, complete cds. 11/11 None
SNAP00000031719 ENSEMBL cdna:SNAP chromosome:CEL140:V:3789970:3797535:1 11/11 None
GENEFINDER00000031729 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3788338:3793546:1 11/11 None
R08F11.7 ENSEMBL cdna:known chromosome:CEL140:V:3789947:3793580:1 gene:R08F11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3789969-3793546(+) 96.04 100.0
Public Domain and Genome References
Gene Title peroxidase
Ensembl R08F11.7
Entrez Gene 187708 Entrez gene
SwissProt O01892 EMBL-EBI
WormBase CE12592 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54249 Hypothetical protein R08F11.7 [Caenorhabditis elegans] ref|NP_504048.1| R08F11.7 [Caenorhabditis elegans] 0.0
blast CAE65447 Hypothetical protein CBG10411 [Caenorhabditis briggsae] 0.0
blast CAE66225 Hypothetical protein CBG11467 [Caenorhabditis briggsae] 0.0
blast T18779 transposase containing protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Pfam IPR009716 EMBL-EBI Ferroportin1 1.0E-5
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000031719 3 1195-1217,1262-1284,1294-1316
Sequence
Target Sequence 
>C. ELEGANS:188793_AT
ggtggatcgatatttctcgttcccaattcgcaatcaactttttgaaattcgcgggaagaa
tgggtcaggagtcgatttgatctctgtgaatattatgagaggacgcgatgtcgggcttat
gccatatgtcaaataccgtacccttgttggactttccccagttgacacctggaatgactt
gtcctccacattcactgcagctaacctagcagcacttaaaactgtctacgctgatccagc
tgacattgacttgtacaccggtctcgtaatggaaacgccacttgctggaggtcaactcgg
accaactgcctcctggatcatcgccgaacagtttagagccctgaagaccggagatcgatt
ctactacgaaaacggcgtcgccaatacagtaggattcacgccaactcaaatcgatgcgat
ccgtcgagtgaagcttgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGATCGATATTTCTCGTTCCCA 255 499 1776 Antisense
AGAGGACGCGATGTCGGGCTTATGC 104 69 1873 Antisense
TCAAATACCGTACCCTTGTTGGACT 508 627 1904 Antisense
GACACCTGGAATGACTTGTCCTCCA 254 367 1939 Antisense
CCACATTCACTGCAGCTAACCTAGC 280 273 1961 Antisense
AAAACTGTCTACGCTGATCCAGCTG 653 129 1993 Antisense
GACATTGACTTGTACACCGGTCTCG 178 371 2017 Antisense
GAAACGCCACTTGCTGGAGGTCAAC 84 359 2047 Antisense
AGAGCCCTGAAGACCGGAGATCGAT 329 69 2110 Antisense
AACGGCGTCGCCAATACAGTAGGAT 638 143 2146 Antisense
TGCGATCCGTCGAGTGAAGCTTGCC 70 557 2190 Antisense
Sequence Source Affymetrix Proprietary Database