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[188792_at] 7TM receptor

Description T23D5.2 /REP_DB=WormBase Gene ID /WP=CE16444 /TR=O45810 /GB=CAA15973.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 35      4grp_total > 39      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 34.8
(1.6)
A 		4.2
(-3)
A 		11.8
(-1.9)
A 		44.1
(3)
A 		40
B 76.6
(3)
A 		7.4
(-2.9)
A 		6.5
(-3)
A 		8.3
(-2.8)
A 		70
C 54.3
(3)
A 		27.7
(-0.5)
A 		9.6
(-2.9)
A 		9.1
(-3)
A 		45
avr 55.2
(3) 		13.1
(-2.5) 		9.3
(-3) 		20.5
(-1.5) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 14.6
(-1.8)
A 		42.8
(3)
A 		12.9
(-2.1)
A 		7.4
(-3)
A 		9.7
(-2.6)
A 		37.4
(2.1)
A 		35
B 46.7
(3)
A 		31.9
(0.9)
A 		35.3
(1.4)
A 		33.5
(1.1)
A 		4.8
(-2.9)
A 		3.9
(-3)
A 		43
C 20.1
(-0.9)
A 		48
(3)
A 		12.9
(-1.9)
A 		9.9
(-2.4)
A 		5.8
(-2.9)
A 		5.3
(-3)
A 		43
avr 27.1
(0.6) 		40.9
(3) 		20.4
(-0.6) 		16.9
(-1.2) 		6.8
(-3) 		15.5
(-1.5) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 12.7
(3)
A 		0.9
(-3)
A 		3.1
(-1.9)
A 		6.5
(-0.2)
A 		12
B 24.4
(3)
A 		1.8
(-2.9)
A 		1.5
(-3)
A 		1.8
(-2.9)
A 		23
C 18
(3)
A 		8
(-0.6)
A 		3.4
(-2.3)
A 		1.5
(-3)
A 		17
avr 18.4
(3) 		3.6
(-2.7) 		2.7
(-3) 		3.3
(-2.8) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.7
(-2.6)
A 		15.2
(3)
A 		2.8
(-2.6)
A 		1.9
(-3)
A 		2.9
(-2.5)
A 		9.1
(0.2)
A 		13
B 16.3
(3)
A 		10.6
(0.7)
A 		8.6
(-0.1)
A 		8.9
(0)
A 		1.9
(-2.8)
A 		1.5
(-3)
A 		15
C 7.5
(-0.3)
A 		14.6
(3)
A 		3.3
(-2.3)
A 		2
(-2.9)
A 		1.9
(-3)
A 		1.8
(-3)
A 		13
avr 8.8
(0.5) 		13.5
(3) 		4.9
(-1.6) 		4.3
(-1.9) 		2.2
(-3) 		4.1
(-2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188792_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13238
Sequence Type Exemplar sequence
Representative Public ID T23D5.2 NCBI
Target Description T23D5.2 /REP_DB=WormBase Gene ID /WP=CE16444 /TR=O45810 /GB=CAA15973.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074515(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074515 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-38) (str-38) mRNA, complete cds. 10/11 None
T23D5.2 ENSEMBL cdna:known chromosome:CEL140:V:15731822:15734893:-1 gene:T23D5.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013597 3/11 Cross Hyb Matching Probes None
SNAP00000041582 5/11 Cross Hyb Matching Probes None
GENEFINDER00000041597 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15733362-15734802(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-38
Ensembl T23D5.2
Entrez Gene 188783 Entrez gene
SwissProt O45810 EMBL-EBI
WormBase CE31997 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04822 Hypothetical protein T23D5.2 [Caenorhabditis elegans] emb|CAA15973.2| Hypothetical protein T23D5.2 [Caenorhabditis elegans] ref|NP_506916.2| Seven TM Receptor family member (str-38) [Caenorhabditis elegans] 0.0
blast CAE66305 Hypothetical protein CBG11555 [Caenorhabditis briggsae] 0.0
blast CAE66306 Hypothetical protein CBG11556 [Caenorhabditis briggsae] 1.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506916.2 7 15-37,50-72,97-119,139-161,205-227,255-277,287-309
T23D5.2 7 15-37,50-72,97-119,139-161,205-227,255-277,287-309
Sequence
Target Sequence 
>C. ELEGANS:188792_AT
atctcctcgttcactggatggaacttccttatctggatcctctatccgtcgtcttttggc
gtgactttcggtttcatgacccatttttgcgctcaagcagagccatattccgatgattat
atgaaaaaagagctctacggagtctataatttggagatcaatgaaacggcccgcttcatt
gttatcgcttataatgctgatggaaccatgcgatggtttaatttgatatttttgttcgga
tccatgataattctcggtttccagtacgccgtgattatctattgcggggttcagatgcag
aagaaaatgaagaaggaaatggcaaacttctcagtgagcaatggaaacttgcagcaacaa
ttcttcaaggctttagttgtacagataactcttcccaccctcctcttccaccttccggct
cttccagtcctattcaccccgttcttcaatgtcagcttcacgtttcaaaccggatttatc
tacgcagtatttagtctctaccctccaattgagacgattgctttcatgataattgttaag
gaatacacaaacatttttagaaaaaaagtgctacgaagaccttcagctccagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCCTCGTTCACTGGATGGAACT 680 33 403 Antisense
GAACTTCCTTATCTGGATCCTCTAT 358 351 423 Antisense
TTGGCGTGACTTTCGGTTTCATGAC 206 707 458 Antisense
TTTCATGACCCATTTTTGCGCTCAA 188 673 474 Antisense
ATGAAACGGCCCGCTTCATTGTTAT 162 43 563 Antisense
GATAATTCTCGGTTTCCAGTACGCC 82 423 648 Antisense
CCAGTACGCCGTGATTATCTATTGC 126 273 663 Antisense
AGTTGTACAGATAACTCTTCCCACC 14 65 777 Antisense
GTTCTTCAATGTCAGCTTCACGTTT 424 443 843 Antisense
TACGCAGTATTTAGTCTCTACCCTC 111 649 883 Antisense
GCTACGAAGACCTTCAGCTCCAGAT 347 301 972 Antisense
Sequence Source Affymetrix Proprietary Database