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[188791_s_at] ETS protein

Description T08H4.3 /REP_DB=WormBase Gene ID /WP=CE19576 /TR=Q22355 /GB=AAC71120.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ETS protein
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 70      6grp_total > 17      4grp_total > 30      6grp_highest_sub > De      6grp_cgc > 11      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 610
1 2 3 4 range
A 735.7
(3)
P 		386.2
(-1.2)
P 		233.8
(-3)
P 		578.4
(1.1)
P 		502
B 843.9
(3)
P 		320.8
(-2.4)
P 		261.7
(-3)
P 		517.3
(-0.4)
P 		582
C 695.3
(3)
P 		361.4
(-1.9)
P 		287.5
(-3)
P 		542
(0.7)
P 		408
avr 758.3
(3) 		356.1
(-1.9) 		261
(-3) 		545.9
(0.4) 		497

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 628.5
(3)
P 		346.1
(-0.9)
P 		195.4
(-3)
P 		208.6
(-2.8)
P 		253.2
(-2.2)
P 		317.9
(-1.3)
P 		433
B 537
(3)
P 		296
(-1.6)
P 		231.6
(-2.8)
P 		237.9
(-2.7)
P 		233
(-2.8)
P 		220.1
(-3)
P 		317
C 492.4
(3)
P 		246.5
(-2.1)
P 		289.5
(-1.2)
P 		202.1
(-3)
P 		235.6
(-2.3)
P 		260.7
(-1.8)
P 		290
avr 552.6
(3) 		296.2
(-1.6) 		238.8
(-2.6) 		216.2
(-3) 		240.6
(-2.6) 		266.2
(-2.1) 		336
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 267.9
(3)
P 		83.8
(-2.3)
P 		61.1
(-3)
P 		84.7
(-2.3)
P 		207
B 269.1
(3)
P 		79.2
(-2.5)
P 		60.6
(-3)
P 		110.2
(-1.6)
P 		209
C 230.2
(3)
P 		103.9
(-2.5)
P 		100.2
(-2.6)
P 		91.4
(-3)
P 		139
avr 255.7
(3) 		89
(-2.5) 		74
(-3) 		95.4
(-2.3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 115.9
(2.5)
P 		123.1
(3)
P 		42.6
(-3)
P 		52.9
(-2.2)
P 		76.4
(-0.5)
P 		77.4
(-0.4)
P 		81
B 186.8
(3)
P 		98.5
(-1.1)
P 		56.2
(-3)
P 		63
(-2.7)
P 		94.7
(-1.2)
P 		82.1
(-1.8)
P 		131
C 182.5
(3)
P 		75.2
(-1.5)
P 		73.7
(-1.6)
P 		40.6
(-3)
P 		76.2
(-1.5)
P 		87.3
(-1)
P 		142
avr 161.7
(3) 		98.9
(-0.4) 		57.5
(-2.7) 		52.2
(-3) 		82.4
(-1.3) 		82.3
(-1.4) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188791_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5655
Sequence Type Exemplar sequence
Representative Public ID T08H4.3 NCBI
Target Description T08H4.3 /REP_DB=WormBase Gene ID /WP=CE19576 /TR=Q22355 /GB=AAC71120.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ETS protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027155 NCBI Caenorhabditis elegans T08H4.3 (T08H4.3) mRNA, complete cds. 11/11 None
SNAP00000025212 ENSEMBL cdna:SNAP chromosome:CEL140:II:4128098:4129296:-1 9/11 None
T08H4.3 ENSEMBL cdna:known chromosome:CEL140:II:4127905:4134861:-1 gene:T08H4.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025213 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4128096-4134832(-) 97.44 100.0
Public Domain and Genome References
Gene Title ETS protein
Gene Symbol ast-1
Ensembl T08H4.3
Entrez Gene 173749 Entrez gene
SwissProt Q22355 EMBL-EBI
WormBase CE19576 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC71120 Hypothetical protein T08H4.3 [Caenorhabditis elegans] ref|NP_001022326.1| T08H4.3 [Caenorhabditis elegans] 0.0
blast CAE74283 Hypothetical protein CBG21979 [Caenorhabditis briggsae] 1.0E-142
blast AAC71120 Hypothetical protein T08H4.3 [Caenorhabditis elegans] ref|NP_001022326.1| T08H4.3 [Caenorhabditis elegans] 1.0E-105
blast CAE74283 Hypothetical protein CBG21979 [Caenorhabditis briggsae] 1.0E-94
blast CAA47389 XLFli protein [Xenopus laevis] sp|P41157|FLI1_XENLA Retroviral integration site protein Fli-1 homolog 6.0E-52
blast CAA47389 XLFli protein [Xenopus laevis] sp|P41157|FLI1_XENLA Retroviral integration site protein Fli-1 homolog 2.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR000418 EMBL-EBI Ets-domain 8.2E-60
Pfam IPR000418 EMBL-EBI Ets-domain 8.2E-60
Sequence
Target Sequence 
>C. ELEGANS:188791_S_AT
ctcctactacaccggagctctcaagctgagtaactcgacatcgtttgccaatccagaccc
ctatcaaatcctgggaccaaccagcaaaaacctcgcacattccggcagtggacagactca
gctctggcaatttctccttgaactcctctcggacaaacgctactccgaagtgattacctg
ggagggcacacagggagagttcaagcttgtggatccggatgaagtggctcgaaaatgggg
agaaagaaagtcaaagccaaacatgaattatgataagatgtcgagagctcttcgctatta
ttacgataagaatataatggcaaaagtccatgggaagagatatgcgtataaatttgattt
tcaaggaatcgcacaggctctccagcctccaactgcttctcatccacaggattactttaa
ttctcatgcgatggggagaattgctcctgatttctcatcgtggacaagtgcaaattatcg
atctctgaatattgccgggtttaataacggcagcacaattttcaacccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCTACTACACCGGAGCTCTCAAG 69 235 537 Antisense
GTAACTCGACATCGTTTGCCAATCC 140 463 566 Antisense
CAGACCCCTATCAAATCCTGGGACC 236 203 590 Antisense
GCACATTCCGGCAGTGGACAGACTC 672 315 631 Antisense
CAGACTCAGCTCTGGCAATTTCTCC 620 205 649 Antisense
GATGTCGAGAGCTCTTCGCTATTAT 234 409 813 Antisense
TCAAGGAATCGCACAGGCTCTCCAG 74 633 897 Antisense
CAACTGCTTCTCATCCACAGGATTA 186 187 926 Antisense
TTGCTCCTGATTTCTCATCGTGGAC 32 703 977 Antisense
TCGATCTCTGAATATTGCCGGGTTT 438 603 1014 Antisense
ACGGCAGCACAATTTTCAACCCATC 670 95 1043 Antisense
Sequence Source Affymetrix Proprietary Database