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[188790_at] protein S10

Description F34H10.3 /REP_DB=WormBase Gene ID /WP=CE01573 /TR=Q09559 /GB=CAA87036.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=protein S10
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 41      6grp_total > 09      4grp_total > 53      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 747
1 2 3 4 range
A 1014.3
(3)
P 		743.2
(0.1)
P 		688.9
(-0.5)
P 		459.8
(-3)
P 		555
B 1008.5
(3)
P 		833.5
(1.3)
P 		697.7
(-0.1)
P 		403.9
(-3)
P 		605
C 1150.5
(3)
P 		870.5
(0.5)
P 		645.1
(-1.5)
P 		477.2
(-3)
P 		673
avr 1057.8
(3) 		815.7
(0.6) 		677.2
(-0.7) 		447
(-3) 		611

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 699
1 2 3 4 5 6 range
A 1180.8
(3)
P 		927.2
(0.6)
P 		699
(-1.5)
P 		846.1
(-0.2)
P 		819
(-0.4)
P 		544.7
(-3)
P 		636
B 1041.4
(3)
P 		724.8
(-0.4)
P 		817.7
(0.6)
P 		874.3
(1.2)
P 		714.4
(-0.5)
P 		481.8
(-3)
P 		560
C 1042
(2.9)
P 		740.5
(-0.6)
P 		782
(-0.1)
P 		1051
(3)
P 		685.8
(-1.2)
P 		530.2
(-3)
P 		521
avr 1088.1
(3) 		797.5
(-0.1) 		766.2
(-0.4) 		923.8
(1.3) 		739.7
(-0.7) 		518.9
(-3) 		569
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 369.3
(3)
P 		161.3
(-1.1)
P 		180.1
(-0.8)
P 		67.3
(-3)
P 		302
B 321.6
(3)
P 		205.9
(0.1)
P 		161.7
(-1.1)
P 		86.1
(-3)
P 		236
C 380.9
(3)
P 		250.3
(0.4)
P 		224.8
(-0.1)
P 		80.5
(-3)
P 		300
avr 357.3
(3) 		205.8
(-0.3) 		188.9
(-0.6) 		78
(-3) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 217.7
(-0.4)
P 		329.8
(3)
P 		152.2
(-2.4)
P 		214.6
(-0.5)
P 		247.2
(0.5)
P 		132.6
(-3)
P 		197
B 362.4
(3)
P 		241.2
(-1)
P 		198.6
(-2.4)
P 		231.6
(-1.3)
P 		290.3
(0.6)
P 		179.6
(-3)
P 		183
C 386.2
(3)
P 		226
(-1.6)
P 		199
(-2.4)
P 		211.4
(-2)
P 		221.9
(-1.7)
P 		177.5
(-3)
P 		209
avr 322.1
(3) 		265.7
(0.9) 		183.3
(-2.2) 		219.2
(-0.9) 		253.1
(0.4) 		163.2
(-3) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188790_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16929
Sequence Type Exemplar sequence
Representative Public ID F34H10.3 NCBI
Target Description F34H10.3 /REP_DB=WormBase Gene ID /WP=CE01573 /TR=Q09559 /GB=CAA87036.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=protein S10
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077223(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077223 NCBI Caenorhabditis elegans F34H10.3 (F34H10.3) mRNA, complete cds. 11/11 None
SNAP00000008832 ENSEMBL cdna:SNAP chromosome:CEL140:X:9633824:9634957:-1 11/11 None
GENEFINDER00000008838 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9633824:9634957:-1 11/11 None
F34H10.3 ENSEMBL cdna:known chromosome:CEL140:X:9633229:9634978:-1 gene:F34H10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9633823-9634957(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein S10
Ensembl F34H10.3
Entrez Gene 181180 Entrez gene
SwissProt Q09559 EMBL-EBI
WormBase CE01573 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87036 Hypothetical protein F34H10.3 [Caenorhabditis elegans] ref|NP_509624.1| F34H10.3 [Caenorhabditis elegans] 1.0E-117
blast CAE69778 Hypothetical protein CBG16064 [Caenorhabditis briggsae] 3.0E-82
Sequence
Target Sequence 
>C. ELEGANS:188790_AT
gactatccaacaactttcaagcccgaagcttggacataatggattaccatgtcgtccgaa
agcaatgacatttgtgaatggacgcccgacacttcctgagatgggacctcttcaacagtg
ccaacatcttcaacaaatccaaagcctcattcactatcacgaacaacaagtaaaataccg
gtcttatatccaattagatatccttcgtcatcttcgcaaacaactgaatgatcaaatgct
cctacacccacaccgtcgccattacgaagcattggtagaagcagctaaatgcaatcgtct
atccccgttgtcagtggcggagagagctcagctagagtacttcacacaaatggctgattg
gacattggatgctcgcgccagcttgcaaggcaaggaatcggtgacctatctcacgctttt
tggacgccaagtttctgacttcaagtctcgtctcaacgaaattacaacccatgagcagtt
ccaggtatttgcaccaatgtttgctgaacgcatcgattatcatcgtgagctcatccatac
tctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTATCCAACAACTTTCAAGCCCG 16 373 186 Antisense
CGCCCGACACTTCCTGAGATGGGAC 181 257 268 Antisense
AGATGGGACCTCTTCAACAGTGCCA 595 67 284 Antisense
AAATCCAAAGCCTCATTCACTATCA 377 119 320 Antisense
ATTAGATATCCTTCGTCATCTTCGC 497 13 378 Antisense
TGAATGATCAAATGCTCCTACACCC 409 575 410 Antisense
ACACCGTCGCCATTACGAAGCATTG 257 109 435 Antisense
CTAAATGCAATCGTCTATCCCCGTT 442 227 470 Antisense
CTATCCCCGTTGTCAGTGGCGGAGA 573 221 484 Antisense
GTGACCTATCTCACGCTTTTTGGAC 374 481 586 Antisense
TCATCGTGAGCTCATCCATACTCTG 687 621 705 Antisense
Sequence Source Affymetrix Proprietary Database