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[188789_at] Thioredoxins

Description C30H6.8 /REP_DB=WormBase Gene ID /WP=CE15652 /TR=Q9XVR3 /GB=CAB02808.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Thioredoxins
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 73      6grp_total > 74      4grp_total > 35      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 309
(3)
P 		302.9
(2.6)
P 		205.5
(-3)
P 		276.5
(1.1)
P 		104
B 183.2
(-3)
P 		318.2
(3)
P 		214
(-1.6)
P 		246.6
(-0.2)
P 		135
C 242.3
(-3)
P 		295.9
(3)
P 		285.2
(1.8)
P 		267.5
(-0.2)
P 		54
avr 244.8
(-2.2) 		305.7
(3) 		234.9
(-3) 		263.5
(-0.6) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 324
1 2 3 4 5 6 range
A 442.8
(-2.9)
P 		436
(-3)
P 		667.8
(1.7)
P 		732.6
(3)
P 		481.7
(-2.1)
P 		558.7
(-0.5)
P 		297
B 410.4
(-3)
P 		498.2
(-0.6)
P 		475.4
(-1.3)
P 		525.2
(0.1)
P 		633.4
(3)
P 		618.2
(2.6)
P 		223
C 408.5
(-3)
P 		457.9
(-1.6)
P 		626.3
(3)
P 		580.6
(1.7)
P 		538.5
(0.6)
P 		602.5
(2.3)
P 		218
avr 420.6
(-3) 		464
(-1.6) 		589.8
(2.3) 		612.8
(3) 		551.2
(1.1) 		593.1
(2.4) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 112.5
(3)
P 		65.7
(-0.9)
P 		53.7
(-1.9)
P 		40.5
(-3)
P 		72
B 58.4
(-1.2)
P 		78.6
(3)
P 		49.6
(-3)
P 		52.5
(-2.4)
P 		29
C 80.2
(0.9)
P 		85.1
(1.4)
P 		99.4
(3)
P 		45.1
(-3)
P 		54
avr 83.7
(3) 		76.5
(1.9) 		67.6
(0.4) 		46
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 81.6
(-3)
P 		155
(1.2)
P 		145.4
(0.7)
P 		185.8
(3)
P 		145.4
(0.7)
P 		136
(0.1)
P 		104
B 142.8
(-1.8)
P 		165.8
(-0.9)
P 		115.4
(-3)
P 		139.1
(-2)
P 		257.3
(3)
P 		230.5
(1.9)
P 		142
C 151.4
(-0.6)
P 		139.7
(-1.4)
P 		159.4
(0)
P 		116.8
(-3)
P 		174.3
(1.1)
P 		201.7
(3)
P 		85
avr 125.3
(-3) 		153.5
(-0.5) 		140.1
(-1.7) 		147.2
(-1) 		192.3
(3) 		189.4
(2.7) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188789_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8411
Sequence Type Exemplar sequence
Representative Public ID C30H6.8 NCBI
Target Description C30H6.8 /REP_DB=WormBase Gene ID /WP=CE15652 /TR=Q9XVR3 /GB=CAB02808.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Thioredoxins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070700(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070700 NCBI Caenorhabditis elegans C30H6.8 (Thioredoxins) mRNA, complete cds. 11/11 None
SNAP00000029655 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17382284:17382945:1 11/11 None
GENEFINDER00000029667 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17382284:17383022:1 11/11 None
C30H6.8 ENSEMBL cdna:known chromosome:CEL140:IV:17382284:17383012:1 gene:C30H6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17382289-17382951(+) 100.0 100.0
Public Domain and Genome References
Gene Title Thioredoxins
Ensembl C30H6.8
Entrez Gene 178525 Entrez gene
SwissProt Q9XVR3 EMBL-EBI
WormBase CE15652 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02808 Hypothetical protein C30H6.8 [Caenorhabditis elegans] ref|NP_503101.1| C30H6.8 [Caenorhabditis elegans] 1.0E-100
blast CAE57444 Hypothetical protein CBG00406 [Caenorhabditis briggsae] 6.0E-82
blast CAE57444 Hypothetical protein CBG00406 [Caenorhabditis briggsae] 2.0E-81
blast CAE56273 Hypothetical protein CBG23918 [Caenorhabditis briggsae] 3.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 2.9E-7
Sequence
Target Sequence 
>C. ELEGANS:188789_AT
cacttcttggttcatcatttcttcgctcagcttctggcaacttcacaaagttcgcaagta
tccgaaatgcacactttttgtcatcggttccaatgaagaagcgtggagttgatggaaatc
taccaaaagattatttcgaaaataagacagtagttgtctacttctcagctggatggtgtg
gatcctgcaaatttctgactccaaagatcaagaaattctacaatgctgtaaaagaatcgg
atgctggaaagaatctggaaatcgtatgggtgtcgaaggacaaagaagcagcccaccaag
aagaatactatgagaagaatcttccagactggccatatattccatttggagatgaaaata
ttcaaaagctatcggaaaagtacaaagcagtggtgataccggttctgaaactcgttaact
ccaatggagatgtcgttcatgatcgtgtccgtgctgacgtagaagctggaatcaaggcgg
atcctgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTTCTTGGTTCATCATTTCTTCG 280 197 23 Antisense
CTCAGCTTCTGGCAACTTCACAAAG 709 227 48 Antisense
TGCACACTTTTTGTCATCGGTTCCA 69 577 90 Antisense
TTGTCTACTTCTCAGCTGGATGGTG 527 667 176 Antisense
GATCCTGCAAATTTCTGACTCCAAA 112 417 203 Antisense
AGAAGCAGCCCACCAAGAAGAATAC 494 71 306 Antisense
GAGAAGAATCTTCCAGACTGGCCAT 650 391 334 Antisense
GGTGATACCGGTTCTGAAACTCGTT 671 497 414 Antisense
GGAGATGTCGTTCATGATCGTGTCC 187 519 448 Antisense
GATCGTGTCCGTGCTGACGTAGAAG 122 381 463 Antisense
GCTGGAATCAAGGCGGATCCTGTGA 698 293 487 Antisense
Sequence Source Affymetrix Proprietary Database