[Home] | [Total List]

[188788_at] MAD protein

Description R05D11.1 /REP_DB=WormBase Gene ID /WP=CE06236 /TR=Q21733 /GB=CAA99889.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=MAD protein
Cluster 4grp_high_8_8 > 13      6grp_total > 91      4grp_total > 19      6grp_cgc > 97      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 82.6
(-0.1)
P 		72.2
(-1)
P 		48.8
(-3)
A 		119.9
(3)
P 		71
B 78.4
(1)
P 		68.4
(0)
A 		37.4
(-3)
A 		98.5
(3)
M 		61
C 42.3
(-3)
P 		76.8
(-1.4)
A 		46.3
(-2.8)
P 		171.6
(3)
P 		129
avr 67.8
(-1.3) 		72.5
(-1) 		44.2
(-3) 		130
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 76.2
(-1.2)
A 		57.8
(-2.9)
A 		56.9
(-3)
P 		70.1
(-1.8)
A 		120.6
(3)
P 		65.3
(-2.2)
A 		64
B 63.7
(1.6)
P 		59.3
(0.7)
A 		42.5
(-3)
A 		69.9
(3)
M 		61.2
(1.1)
P 		52.3
(-0.9)
P 		27
C 46.1
(1.4)
P 		57.6
(2.8)
P 		59
(3)
P 		59.4
(3)
A 		11
(-3)
A 		26.1
(-1.1)
A 		48
avr 62
(1.5) 		58.2
(0.3) 		52.8
(-1.4) 		66.5
(3) 		64.3
(2.3) 		47.9
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 30.1
(3)
P 		15.7
(-2)
P 		12.7
(-3)
A 		17.6
(-1.3)
P 		17
B 25
(3)
P 		16.9
(0)
A 		8.7
(-3)
A 		21
(1.5)
M 		16
C 14
(-3)
P 		22.1
(0.3)
A 		16.1
(-2.2)
P 		28.9
(3)
P 		15
avr 23
(3) 		18.2
(0.3) 		12.5
(-3) 		22.5
(2.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 14.1
(-2.6)
A 		20.5
(-1)
A 		12.4
(-3)
P 		17.8
(-1.7)
A 		36.4
(3)
P 		15.9
(-2.1)
A 		24
B 22.2
(1.9)
P 		19.7
(0.9)
A 		10.3
(-3)
A 		18.5
(0.4)
M 		24.9
(3)
P 		19.5
(0.8)
P 		15
C 17.1
(2.8)
P 		17.6
(3)
P 		15
(1.9)
P 		11.9
(0.6)
A 		3.6
(-3)
A 		8.7
(-0.8)
A 		14
avr 17.8
(0.5) 		19.3
(1.5) 		12.6
(-3) 		16.1
(-0.7) 		21.6
(3) 		14.7
(-1.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188788_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1025
Sequence Type Exemplar sequence
Representative Public ID R05D11.1 NCBI
Target Description R05D11.1 /REP_DB=WormBase Gene ID /WP=CE06236 /TR=Q21733 /GB=CAA99889.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=MAD protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059920(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059920 NCBI Caenorhabditis elegans R05D11.1 (R05D11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000034025 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8592184:8595614:-1 11/11 None
SNAP00000034016 ENSEMBL cdna:SNAP chromosome:CEL140:I:8592681:8595614:-1 11/11 None
R05D11.1 ENSEMBL cdna:known chromosome:CEL140:I:8592681:8595632:-1 gene:R05D11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8592611-8595545(-) 100.0 100.0
Public Domain and Genome References
Gene Title MAD protein
Gene Symbol daf-8
Ensembl R05D11.1
Entrez Gene 187612 Entrez gene
SwissProt Q21733 EMBL-EBI
WormBase CE06236 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99889 Hypothetical protein R05D11.1 [Caenorhabditis elegans] ref|NP_492321.1| R05D11.1 [Caenorhabditis elegans] 0.0
blast CAE67102 Hypothetical protein CBG12513 [Caenorhabditis briggsae] 1.0E-100
blast CAE67102 Hypothetical protein CBG12513 [Caenorhabditis briggsae] 4.0E-98
blast AAV36990 LD15813p [Drosophila melanogaster] gb|AAF46330.1| CG2262-PA [Drosophila melanogaster] ref|NP_511079.1| CG2262-PA [Drosophila melanogaster] gb|AAD22443.1| Smad on X [Drosophila melanogaster] gb|AAD11458.1| transcription factor SMAD2 [Drosophila melanogaster] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR003619 EMBL-EBI Dwarfin protein, domain A 2.1E-42
Pfam IPR001132 EMBL-EBI Dwarfin protein 7.7E-105
Sequence
Target Sequence 
>C. ELEGANS:188788_AT
gaagggcatcactgcctgatcgatggatttacagctagtcgcactgactcagaaaccaga
agccgtttctcgcttggttggtacaacaatccaaaccgctctccacaaacggccgaagtt
cgtggtctcattggaaagggtgttcgattttacttgttagctggtgaagtctatgtagag
aatttgtgcaatattcctgtttttgtacagtcaatcggtgcaaatatgaagaatggtttc
caattgaatactgtatcaaagttgcctccaactggaactatgaaagtttttgacatgaga
ttattctccaaacagctgagaacagcagctgagaagacatatcaagacgtctactgtctc
tcacgaatgtgcacagttcgtgtttcgttctgcaaaggttggggagaacactatcgtcgt
tcaaccgtcctccgatcgcctgtttggtttcaggctcatttgaataatccgatgcattgg
gtcgatagtgtactcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGGCATCACTGCCTGATCGATG 349 335 1114 Antisense
GGATTTACAGCTAGTCGCACTGACT 462 509 1138 Antisense
AAACCAGAAGCCGTTTCTCGCTTGG 552 125 1166 Antisense
TGGTACAACAATCCAAACCGCTCTC 660 551 1192 Antisense
AACGGCCGAAGTTCGTGGTCTCATT 330 143 1221 Antisense
GGGTGTTCGATTTTACTTGTTAGCT 31 499 1251 Antisense
TCAAGACGTCTACTGTCTCTCACGA 215 633 1455 Antisense
ATGTGCACAGTTCGTGTTTCGTTCT 273 49 1480 Antisense
AGAACACTATCGTCGTTCAACCGTC 82 71 1518 Antisense
CTCCGATCGCCTGTTTGGTTTCAGG 444 233 1543 Antisense
GCATTGGGTCGATAGTGTACTCACT 357 307 1587 Antisense
Sequence Source Affymetrix Proprietary Database