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[188786_at] lin-15B like

Description F46F2.4 /REP_DB=WormBase Gene ID /WP=CE05881 /TR=Q20470 /GB=CAA93774.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=lin-15B like
Cluster 6grp_total > 90      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 34.1
(-0.2)
A 		46.6
(1.3)
A 		11.1
(-3)
A 		61.1
(3)
A 		50
B 7.3
(-3)
A 		60.9
(3)
A 		59.5
(2.8)
A 		19.9
(-1.6)
A 		54
C 35.4
(-3)
A 		79.5
(2.6)
A 		50.5
(-1.1)
A 		82.9
(3)
A 		48
avr 25.6
(-3) 		62.3
(3) 		40.4
(-0.6) 		54.6
(1.7) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 60.6
(3)
A 		5.8
(-3)
A 		41.1
(0.9)
A 		58.2
(2.7)
A 		9.3
(-2.6)
A 		9.6
(-2.6)
A 		55
B 38.3
(0.2)
A 		38
(0.2)
A 		7
(-3)
A 		65.1
(3)
A 		57.7
(2.2)
A 		49.9
(1.4)
A 		58
C 5.9
(-3)
A 		79.9
(3)
A 		5.4
(-3)
A 		69.5
(2.2)
A 		7.1
(-2.9)
A 		41.8
(-0.1)
A 		75
avr 34.9
(-0.8) 		41.2
(0) 		17.8
(-3) 		64.3
(3) 		24.7
(-2.1) 		33.8
(-0.9) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 12.4
(3)
A 		10.1
(1.5)
A 		2.9
(-3)
A 		8.9
(0.8)
A 		10
B 2.3
(-3)
A 		15
(3)
A 		13.8
(2.4)
A 		4.2
(-2.1)
A 		13
C 11.7
(-3)
A 		22.8
(3)
A 		17.6
(0.2)
A 		14
(-1.8)
A 		11
avr 8.8
(-3) 		16
(3) 		11.4
(-0.8) 		9
(-2.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 11.2
(1.3)
A 		2.1
(-3)
A 		8.9
(0.2)
A 		14.8
(3)
A 		2.8
(-2.7)
A 		2.3
(-2.9)
A 		13
B 13.3
(0.2)
A 		12.6
(0)
A 		1.7
(-3)
A 		17.3
(1.3)
A 		23.4
(3)
A 		18.6
(1.7)
A 		22
C 2.2
(-2.8)
A 		24.4
(3)
A 		1.4
(-3)
A 		14
(0.3)
A 		2.3
(-2.8)
A 		14
(0.3)
A 		23
avr 8.9
(-0.4) 		13
(1.7) 		4
(-3) 		15.4
(3) 		9.5
(-0.1) 		11.6
(1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188786_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17758
Sequence Type Exemplar sequence
Representative Public ID F46F2.4 NCBI
Target Description F46F2.4 /REP_DB=WormBase Gene ID /WP=CE05881 /TR=Q20470 /GB=CAA93774.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=lin-15B like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078130(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078130 NCBI Caenorhabditis elegans F46F2.4 (F46F2.4) mRNA, complete cds. 11/11 None
GENEFINDER00000014647 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15250726:15258928:1 11/11 None
SNAP00000014640 ENSEMBL cdna:SNAP chromosome:CEL140:X:15257514:15258928:1 11/11 None
F46F2.4 ENSEMBL cdna:known chromosome:CEL140:X:15257514:15258928:1 gene:F46F2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15257513-15258928(+) 100.0 100.0
Public Domain and Genome References
Gene Title lin-15B like
Ensembl F46F2.4
Entrez Gene 185851 Entrez gene
SwissProt Q20470 EMBL-EBI
WormBase CE05881 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93774 Hypothetical protein F46F2.4 [Caenorhabditis elegans] ref|NP_510531.1| F46F2.4 [Caenorhabditis elegans] 0.0
blast CAA93773 Hypothetical protein F46F2.1 [Caenorhabditis elegans] ref|NP_510530.1| F46F2.1 [Caenorhabditis elegans] 0.0
blast AAC04439 Hypothetical protein T22B2.1 [Caenorhabditis elegans] ref|NP_508680.1| T22B2.1 [Caenorhabditis elegans] 0.0
blast CAB01908 Hypothetical protein ZK662.4 [Caenorhabditis elegans] emb|CAB01901.1| Hypothetical protein ZK662.4 [Caenorhabditis elegans] ref|NP_510587.1| abnormal cell LINeage family member (lin-15B) [Caenorhabditis elegans] emb|CAA82854.1| lin-15B [Caenorhabditis elegans] gb|AAA20089.1| lin-15B protein gb|AAA20088.1| lin-15B protein 2.0E-77
blast CAB01908 Hypothetical protein ZK662.4 [Caenorhabditis elegans] emb|CAB01901.1| Hypothetical protein ZK662.4 [Caenorhabditis elegans] ref|NP_510587.1| abnormal cell LINeage family member (lin-15B) [Caenorhabditis elegans] emb|CAA82854.1| lin-15B [Caenorhabditis elegans] gb|AAA20089.1| lin-15B protein gb|AAA20088.1| lin-15B protein 8.0E-71
blast CAB60456 Hypothetical protein ZK662.5 [Caenorhabditis elegans] ref|NP_510586.1| ZK662.5 [Caenorhabditis elegans] 1.0E-60
Protein Domains
Database ID Description E-Value
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 6.59999990463257
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510531.1 2 12-34,39-58
F46F2.4 2 12-34,39-58
SNAP00000014640 3 12-34,39-56,68-90
Sequence
Target Sequence 
>C. ELEGANS:188786_AT
atccgagaattgtctactgccgcattcaaagagatcacgtcaggaccatcacatgatcaa
tacaatatttctaccctcttggatccccgttatgcgtactgcaaaaaagtgtataccgaa
gagacttggaacactctcgaaatgaagtttattgagcgattgattaacaatcctaattat
gatgatgttaaactcgttcacatctgtttgatatcggacaaagaaatacaattggacatt
atcaaagctgaattggctaattatcgtcaaagcactgcctgttcgagtaggcttcaaaat
gatgcaagcccatatgcgtggtggaacaatcatgaaggaggaaccacgtttttggctata
ttggctcgggaatatttggcgactccagcagtgtctattgatgctaattactttttttca
agcagattccaacacatcttgaatacttacttttcacgacaactcgacatgtatttggag
cttgccggaggctatcaaacatataaaggaaaaggtgcattgaaggtttgtgacataagt
gagtgcgatgcttttggacggcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCGAGAATTGTCTACTGCCGCAT 314 39 499 Antisense
GAGATCACGTCAGGACCATCACATG 155 397 529 Antisense
TACAATATTTCTACCCTCTTGGATC 708 641 559 Antisense
GATCCCCGTTATGCGTACTGCAAAA 338 417 580 Antisense
TCGTCAAAGCACTGCCTGTTCGAGT 239 605 762 Antisense
GATGCAAGCCCATATGCGTGGTGGA 399 411 799 Antisense
GGAGGAACCACGTTTTTGGCTATAT 431 515 835 Antisense
ATATTTGGCGACTCCAGCAGTGTCT 489 19 870 Antisense
ATACTTACTTTTCACGACAACTCGA 684 23 941 Antisense
GGAGCTTGCCGGAGGCTATCAAACA 460 521 975 Antisense
TGAGTGCGATGCTTTTGGACGGCCA 312 565 1038 Antisense
Sequence Source Affymetrix Proprietary Database