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[188785_s_at] 7TM receptor

Description F15A4.5 /REP_DB=WormBase Gene ID /WP=CE23657 /TR=O17814 /GB=CAB02943.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_high1_10_10 > 02      6grp_total > 25      4grp_total > 21      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 365
1 2 3 4 range
A 344.4
(-0.5)
P 		304.9
(-1.5)
A 		242.6
(-3)
A 		486
(3)
P 		243
B 382.8
(1.4)
P 		290.7
(-0.2)
A 		130.8
(-3)
A 		474.3
(3)
P 		344
C 369.4
(0.4)
P 		304.7
(-1)
P 		209.5
(-3)
A 		495.8
(3)
P 		286
avr 365.5
(0.5) 		300.1
(-0.8) 		194.3
(-3) 		485.4
(3) 		291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 262.1
(3)
A 		262.9
(3)
P 		247.3
(2.1)
P 		185.5
(-1.6)
A 		163
(-3)
A 		162.3
(-3)
A 		101
B 277.2
(1.8)
P 		298.9
(3)
P 		257.5
(0.7)
P 		229
(-0.9)
P 		192.4
(-3)
P 		227.6
(-1)
P 		107
C 335.2
(3)
P 		286.2
(1.7)
P 		226.7
(0.1)
A 		108.4
(-3)
A 		168.4
(-1.4)
P 		178.7
(-1.1)
P 		227
avr 291.5
(3) 		282.7
(2.5) 		243.8
(0.6) 		174.3
(-3) 		174.6
(-3) 		189.5
(-2.2) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 125.4
(3)
P 		66.2
(-2.7)
A 		63.4
(-3)
A 		71.1
(-2.3)
P 		62
B 122.1
(3)
P 		71.8
(-0.3)
A 		30.3
(-3)
A 		101.1
(1.6)
P 		92
C 122.3
(3)
P 		87.6
(-1.2)
P 		73
(-3)
A 		83.6
(-1.7)
P 		49
avr 123.3
(3) 		75.2
(-1.3) 		55.6
(-3) 		85.3
(-0.4) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 48.3
(-2)
A 		93.5
(3)
P 		53.8
(-1.4)
P 		47.1
(-2.2)
A 		49.2
(-1.9)
A 		39.5
(-3)
A 		54
B 96.5
(2.5)
P 		99.5
(3)
P 		62.5
(-2.7)
P 		60.7
(-3)
P 		78.2
(-0.3)
P 		84.9
(0.7)
P 		39
C 124.2
(3)
P 		87.3
(0.8)
P 		57.7
(-0.9)
A 		21.8
(-3)
A 		54.5
(-1.1)
P 		59.8
(-0.8)
P 		102
avr 89.7
(2.6) 		93.4
(3) 		58
(-1.2) 		43.2
(-3) 		60.6
(-0.9) 		61.4
(-0.8) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188785_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3684
Sequence Type Exemplar sequence
Representative Public ID F15A4.5 NCBI
Target Description F15A4.5 /REP_DB=WormBase Gene ID /WP=CE23657 /TR=O17814 /GB=CAB02943.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064256(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064256 NCBI Caenorhabditis elegans F15A4.5 (F15A4.5) mRNA, complete cds. 11/11 None
SNAP00000042548 ENSEMBL cdna:SNAP chromosome:CEL140:II:12469462:12471106:-1 11/11 None
GENEFINDER00000042564 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12469462:12471106:-1 11/11 None
F15A4.5 ENSEMBL cdna:known chromosome:CEL140:II:12469354:12471106:-1 gene:F15A4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12469458-12471103(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Ensembl F15A4.5
Entrez Gene 174886 Entrez gene
SwissProt O17814 EMBL-EBI
WormBase CE23657 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02943 Hypothetical protein F15A4.5 [Caenorhabditis elegans] ref|NP_496657.1| F15A4.5 [Caenorhabditis elegans] 1.0E-109
blast CAE73514 Hypothetical protein CBG20976 [Caenorhabditis briggsae] 3.0E-77
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496657.1 1 153-175
F15A4.5 1 153-175
SNAP00000042548 1 153-175
GENEFINDER00000042564 1 153-175
Sequence
Target Sequence 
>C. ELEGANS:188785_S_AT
atgccatccgaagcgttgtcaatcatagatccacattcctgcaggatgagatgaagaaga
cgtgtctgggaaaggatttcatgatgatgaaggtcaatattgtggaggggctcaaacata
atgagaccatctacgagaattacgctcattggggagataattgtgtcttccatgtctacg
acgctggcgttgtctccctccagaaatggtgtctagaggacccggctcgccatttgatct
acgagcaaaatcagaccgagagaagattggatggaactcagatgattatcgacaccaagt
gccatctcttcggggatgatcctgacgacttcttccaaaacctctcggagaacttcatca
agatcttcattattgtggcgtcggtctcaattattttgatcatcgtcaactggatcttcc
gtcgtgacgtcgtcgtcgtggtgaacaacgttgccgagaaagccaagctcgtggaggaga
agatcgaaagcgccgtcgagcagcaccacgagtggaagcaaaaggaccttgacgactcca
acgataaggctctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCATCCGAAGCGTTGTCAATCA 276 41 119 Antisense
CAATCATAGATCCACATTCCTGCAG 536 181 138 Antisense
ATGTCTACGACGCTGGCGTTGTCTC 250 47 290 Antisense
TTGTCTCCCTCCAGAAATGGTGTCT 418 691 308 Antisense
AAATGGTGTCTAGAGGACCCGGCTC 360 119 322 Antisense
TTATCGACACCAAGTGCCATCTCTT 623 679 404 Antisense
AACCTCTCGGAGAACTTCATCAAGA 698 145 457 Antisense
ATCTTCATTATTGTGGCGTCGGTCT 399 31 481 Antisense
CGTCAACTGGATCTTCCGTCGTGAC 303 245 522 Antisense
TGACGTCGTCGTCGTGGTGAACAAC 688 565 543 Antisense
GACGACTCCAACGATAAGGCTCTGC 698 379 649 Antisense
Sequence Source Affymetrix Proprietary Database