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[188784_s_at] 7TM receptor /// 7TM receptor

Description T23D5.8 /REP_DB=WormBase Gene ID /WP=CE16448 /TR=O45801 /GB=CAB04813.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 55      4grp_total > 07      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 17.3
(1)
A 		9.4
(-3)
A 		21.3
(3)
A 		10.6
(-2.4)
A 		12
B 6.5
(-1.7)
A 		3.6
(-3)
A 		17.2
(3)
A 		7.1
(-1.5)
A 		14
C 26.9
(3)
A 		2.7
(-3)
A 		12.9
(-0.5)
A 		24.5
(2.4)
A 		24
avr 16.9
(2.9) 		5.2
(-3) 		17.1
(3) 		14.1
(1.5) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 5.4
(-2.6)
A 		3
(-3)
A 		27.3
(1)
A 		33.8
(2)
A 		10
(-1.9)
A 		39.7
(3)
A 		37
B 7.9
(2)
A 		9
(3)
A 		3.6
(-1.8)
A 		7.2
(1.4)
A 		4.6
(-0.9)
A 		2.3
(-3)
A 		7
C 5.6
(-2.3)
A 		36.1
(3)
A 		24.6
(1)
A 		1.6
(-3)
A 		2.1
(-2.9)
A 		16.7
(-0.4)
A 		35
avr 6.3
(-2.7) 		16
(1.5) 		18.5
(2.5) 		14.2
(0.7) 		5.6
(-3) 		19.6
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6.3
(3)
A 		2
(-2.4)
A 		5.6
(2.1)
A 		1.5
(-3)
A 		5
B 2.1
(-0.7)
A 		0.9
(-3)
A 		4
(3)
A 		1.5
(-1.8)
A 		3
C 8.9
(3)
A 		0.8
(-3)
A 		4.5
(-0.3)
A 		4.1
(-0.6)
A 		8
avr 5.8
(3) 		1.2
(-3) 		4.7
(1.6) 		2.4
(-1.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1
(-3)
A 		1.1
(-2.9)
A 		6
(0.4)
A 		8.6
(2.2)
A 		3
(-1.6)
A 		9.7
(3)
A 		9
B 2.8
(2.4)
A 		3
(3)
A 		0.9
(-3)
A 		1.9
(-0.1)
A 		1.9
(-0.1)
A 		0.9
(-3)
A 		2
C 2.1
(-2)
A 		11
(3)
A 		6.2
(0.3)
A 		0.3
(-3)
A 		0.7
(-2.8)
A 		5.6
(-0)
A 		11
avr 2
(-2.8) 		5
(2.3) 		4.4
(1.3) 		3.6
(-0.1) 		1.9
(-3) 		5.4
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188784_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13771
Sequence Type Exemplar sequence
Representative Public ID T23D5.8 NCBI
Target Description T23D5.8 /REP_DB=WormBase Gene ID /WP=CE16448 /TR=O45801 /GB=CAB04813.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074520(11), NM_074524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074520 NCBI Caenorhabditis elegans T23D5.8 (T23D5.8) mRNA, complete cds. 11/11 A 
NM_074524 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-8) (str-8) mRNA, complete cds. 11/11 A 
SNAP00000041591 ENSEMBL cdna:SNAP chromosome:CEL140:V:15750064:15750982:-1 11/11 None
SNAP00000041595 ENSEMBL cdna:SNAP chromosome:CEL140:V:15757615:15758978:1 11/11 None
GENEFINDER00000041602 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15755900:15758826:1 11/11 None
GENEFINDER00000041603 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15748296:15752697:-1 11/11 None
T23D5.8 ENSEMBL cdna:known chromosome:CEL140:V:15750064:15750982:-1 gene:T23D5.8 11/11 A 
T23D5.11 ENSEMBL cdna:known chromosome:CEL140:V:15757615:15758978:1 gene:T23D5.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15750063-15750982(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
7TM receptor
Gene Symbol str-8
Ensembl T23D5.8
T23D5.11
Entrez Gene 188787 Entrez gene
188790 Entrez gene
SwissProt O45802 EMBL-EBI
O45801 EMBL-EBI
WormBase CE16451 Wormbase
CE16448 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04814 Hypothetical protein T23D5.11 [Caenorhabditis elegans] ref|NP_506925.1| Seven TM Receptor family member (str-8) [Caenorhabditis elegans] 0.0
blast CAB04814 Hypothetical protein T23D5.11 [Caenorhabditis elegans] ref|NP_506925.1| Seven TM Receptor family member (str-8) [Caenorhabditis elegans] 1.0E-174
blast CAB09419 Hypothetical protein F57A10.1 [Caenorhabditis elegans] ref|NP_506926.1| Seven TM Receptor family member (str-9) [Caenorhabditis elegans] 1.0E-172
blast CAB09419 Hypothetical protein F57A10.1 [Caenorhabditis elegans] ref|NP_506926.1| Seven TM Receptor family member (str-9) [Caenorhabditis elegans] 1.0E-169
blast CAB04820 Hypothetical protein T23D5.12 [Caenorhabditis elegans] ref|NP_506924.1| Seven TM Receptor family member (str-5) [Caenorhabditis elegans] 1.0E-167
blast CAB04819 Hypothetical protein T23D5.10 [Caenorhabditis elegans] ref|NP_506922.1| Seven TM Receptor family member (str-6) [Caenorhabditis elegans] 1.0E-167
blast CAB09419 Hypothetical protein F57A10.1 [Caenorhabditis elegans] ref|NP_506926.1| Seven TM Receptor family member (str-9) [Caenorhabditis elegans] 1.0E-165
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.1E-17
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.5E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506921.1 3 4-21,34-56,81-103
NP_506925.1 7 4-21,34-56,81-103,124-146,190-212,233-255,270-292
T23D5.8 3 4-21,34-56,81-103
T23D5.11 7 4-21,34-56,81-103,124-146,190-212,233-255,270-292
SNAP00000041591 3 4-21,34-56,81-103
SNAP00000041595 7 4-21,34-56,81-103,124-146,190-212,233-255,270-292
GENEFINDER00000041602 14 21-43,68-90,111-130,145-164,225-247,257-279,305-327,331-353,366-388,413-435,456-478,522-544,565-587,602-624
GENEFINDER00000041603 10 21-43,68-90,111-130,145-164,225-247,257-279,305-327,331-353,366-388,413-435
Sequence
Target Sequence 
>C. ELEGANS:188784_S_AT
tccaatgcattcttcggcttcattctggtattcctgacattgtgtcacatcagtcgacaa
ttcggatcatataagtacttgctcgtgaacttccaagtgcttggattcattttcgccaca
ttcgagtatctttttcacacgttcctgcacacctacaatgcgagtttgatctactttagt
ttctcccgcccattgggtctttcaaatttcacaatggaatggatgatgggaatctacaca
ggactatactctgcaacaatttgccagctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAATGCATTCTTCGGCTTCATTC 545 587 34 Antisense
GGCTTCATTCTGGTATTCCTGACAT 633 537 49 Antisense
GTCACATCAGTCGACAATTCGGATC 385 465 77 Antisense
GGATCATATAAGTACTTGCTCGTGA 397 511 97 Antisense
TGCTCGTGAACTTCCAAGTGCTTGG 636 581 113 Antisense
GCTTGGATTCATTTTCGCCACATTC 440 307 132 Antisense
TTCGAGTATCTTTTTCACACGTTCC 555 695 154 Antisense
CCTGCACACCTACAATGCGAGTTTG 46 263 177 Antisense
GCGAGTTTGATCTACTTTAGTTTCT 125 291 193 Antisense
TCCCGCCCATTGGGTCTTTCAAATT 246 597 217 Antisense
TACTCTGCAACAATTTGCCAGCTGG 430 645 280 Antisense
Sequence Source Affymetrix Proprietary Database