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[188783_at] 7TM receptor

Description T23D5.8 /REP_DB=WormBase Gene ID /WP=CE16448 /TR=O45801 /GB=CAB04813.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 90      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 38.1
(2.4)
A 		25.3
(-0.1)
A 		10.4
(-3)
A 		41.4
(3)
A 		31
B 7.3
(-2)
A 		21.3
(3)
A 		4.4
(-3)
A 		14.6
(0.6)
A 		17
C 29.4
(0.5)
A 		48.2
(3)
A 		2.6
(-3)
A 		5.8
(-2.6)
A 		46
avr 24.9
(1.4) 		31.6
(3) 		5.8
(-3) 		20.6
(0.4) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 9.7
(-1.6)
A 		5
(-3)
A 		5.8
(-2.8)
A 		25
(3)
A 		11.2
(-1.1)
A 		13.7
(-0.4)
A 		20
B 7.9
(-1.5)
A 		10.6
(-0.5)
A 		19.8
(3)
A 		6.7
(-1.9)
A 		3.8
(-3)
A 		5.3
(-2.4)
A 		16
C 50.1
(2.5)
A 		9.8
(-2.5)
A 		8.1
(-2.8)
A 		54.4
(3)
A 		9.7
(-2.6)
A 		6.1
(-3)
A 		48
avr 22.6
(1.2) 		8.5
(-2.9) 		11.2
(-2.1) 		28.7
(3) 		8.2
(-3) 		8.4
(-2.9) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.9
(3)
A 		5.5
(-1.5)
A 		2.7
(-3)
A 		6.1
(-1.2)
A 		11
B 2.3
(-1.2)
A 		5.3
(3)
A 		1
(-3)
A 		3.1
(-0.1)
A 		4
C 9.7
(1.1)
A 		13.9
(3)
A 		0.9
(-3)
A 		1
(-3)
A 		13
avr 8.6
(3) 		8.2
(2.7) 		1.5
(-3) 		3.4
(-1.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.8
(-2.4)
A 		1.8
(-2.4)
A 		1.3
(-3)
A 		6.3
(3)
A 		3.4
(-0.5)
A 		3.3
(-0.6)
A 		5
B 2.8
(-0.8)
A 		3.5
(0.6)
A 		4.8
(3)
A 		1.8
(-2.6)
A 		1.6
(-3)
A 		2
(-2.3)
A 		3
C 18.6
(3)
A 		3
(-2.6)
A 		2.1
(-3)
A 		10.9
(0.2)
A 		3.1
(-2.6)
A 		2
(-3)
A 		17
avr 7.7
(3) 		2.8
(-2.5) 		2.7
(-2.7) 		6.3
(1.4) 		2.7
(-2.7) 		2.4
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188783_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13771
Sequence Type Exemplar sequence
Representative Public ID T23D5.8 NCBI
Target Description T23D5.8 /REP_DB=WormBase Gene ID /WP=CE16448 /TR=O45801 /GB=CAB04813.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074520(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074520 NCBI Caenorhabditis elegans T23D5.8 (T23D5.8) mRNA, complete cds. 11/11 A 
SNAP00000041591 ENSEMBL cdna:SNAP chromosome:CEL140:V:15750064:15750982:-1 11/11 None
GENEFINDER00000041603 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15748296:15752697:-1 11/11 None
T23D5.8 ENSEMBL cdna:known chromosome:CEL140:V:15750064:15750982:-1 gene:T23D5.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15750063-15750982(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Ensembl T23D5.8
Entrez Gene 188787 Entrez gene
SwissProt O45801 EMBL-EBI
WormBase CE16448 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04820 Hypothetical protein T23D5.12 [Caenorhabditis elegans] ref|NP_506924.1| Seven TM Receptor family member (str-5) [Caenorhabditis elegans] 1.0E-167
blast CAB04819 Hypothetical protein T23D5.10 [Caenorhabditis elegans] ref|NP_506922.1| Seven TM Receptor family member (str-6) [Caenorhabditis elegans] 1.0E-167
blast CAE66308 Hypothetical protein CBG11558 [Caenorhabditis briggsae] 1.0E-128
blast CAB04813 Hypothetical protein T23D5.8 [Caenorhabditis elegans] ref|NP_506921.1| T23D5.8 [Caenorhabditis elegans] 1.0E-127
blast CAB04814 Hypothetical protein T23D5.11 [Caenorhabditis elegans] ref|NP_506925.1| Seven TM Receptor family member (str-8) [Caenorhabditis elegans] 1.0E-73
blast CAB09419 Hypothetical protein F57A10.1 [Caenorhabditis elegans] ref|NP_506926.1| Seven TM Receptor family member (str-9) [Caenorhabditis elegans] 2.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506921.1 3 4-21,34-56,81-103
T23D5.8 3 4-21,34-56,81-103
SNAP00000041591 3 4-21,34-56,81-103
GENEFINDER00000041603 10 21-43,68-90,111-130,145-164,225-247,257-279,305-327,331-353,366-388,413-435
Sequence
Target Sequence 
>C. ELEGANS:188783_AT
ttactgtacacatgacacaccgccatcggatgaatgtatcggtggagttgggaaggtttt
gctaaaggcacaaaaggaatctaggtggacaactacgaacaacttacatatatcaaattt
atcacacacgggacttgagaaatattcacctgatagacatccatcagttcttgtcgcata
tactctattgcgtattcatctgcttcgtccagtttatacaatccgagtgcccattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACTGTACACATGACACACCGCCA 530 683 396 Antisense
GACACACCGCCATCGGATGAATGTA 511 365 409 Antisense
TCGGTGGAGTTGGGAAGGTTTTGCT 218 489 434 Antisense
GGTGGACAACTACGAACAACTTACA 481 497 479 Antisense
ATCAAATTTATCACACACGGGACTT 569 27 507 Antisense
AATATTCACCTGATAGACATCCATC 72 175 536 Antisense
ACATCCATCAGTTCTTGTCGCATAT 5 107 552 Antisense
GTTCTTGTCGCATATACTCTATTGC 221 445 562 Antisense
CTATTGCGTATTCATCTGCTTCGTC 534 223 580 Antisense
TGCTTCGTCCAGTTTATACAATCCG 522 579 596 Antisense
TTATACAATCCGAGTGCCCATTCAA 605 679 609 Antisense
Sequence Source Affymetrix Proprietary Database