[Home] | [Total List]

[188782_at] 7TM receptor

Description T21B4.8 /REP_DB=WormBase Gene ID /WP=CE16433 /TR=O18103 /GB=CAB03375.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 01      4grp_total > 02      6grp_cgc > 63      6grp_cgc_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 37.9
(-0.5)
A 		7.9
(-2.9)
A 		7.2
(-3)
A 		79.9
(3)
A 		73
B 8.1
(-3)
A 		20.9
(-2.2)
A 		31.8
(-1.6)
A 		107.9
(3)
M 		100
C 34.2
(-2.2)
A 		42.4
(-0.6)
A 		30.2
(-3)
A 		60.7
(3)
A 		31
avr 26.7
(-2.6) 		23.7
(-2.9) 		23.1
(-3) 		82.8
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 13.8
(-1.9)
A 		45
(3)
A 		33
(1.1)
A 		7.2
(-3)
A 		43.5
(2.8)
A 		7.1
(-3)
A 		38
B 41
(0.1)
P 		71.1
(3)
A 		7.9
(-3)
A 		57.4
(1.7)
A 		25.7
(-1.3)
A 		20.5
(-1.8)
A 		63
C 2.6
(-3)
A 		44
(2.9)
A 		2.8
(-3)
A 		44.8
(3)
M 		8.3
(-2.2)
A 		25.2
(0.2)
A 		42
avr 19.1
(-2.3) 		53.4
(3) 		14.6
(-3) 		36.5
(0.4) 		25.8
(-1.3) 		17.6
(-2.5) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 13.8
(3)
A 		1.7
(-3)
A 		1.9
(-2.9)
A 		11.7
(2)
A 		12
B 2.6
(-3)
A 		5.2
(-2.2)
A 		7.4
(-1.6)
A 		23
(3)
M 		20
C 11.3
(0.3)
A 		12.2
(3)
A 		10.5
(-2.1)
A 		10.2
(-3)
A 		2
avr 9.2
(-1) 		6.4
(-3) 		6.6
(-2.9) 		15
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 2.5
(-2.7)
A 		16
(3)
A 		7.2
(-0.7)
A 		1.8
(-3)
A 		13.1
(1.8)
A 		1.7
(-3)
A 		14
B 14.3
(0.4)
P 		23.7
(3)
A 		1.9
(-3)
A 		15.2
(0.7)
A 		10.4
(-0.7)
A 		7.7
(-1.4)
A 		22
C 1
(-2.9)
A 		13.4
(3)
A 		0.7
(-3)
A 		9
(0.9)
M 		2.7
(-2.1)
A 		8.4
(0.6)
A 		13
avr 5.9
(-1.9) 		17.7
(3) 		3.3
(-3) 		8.7
(-0.8) 		8.7
(-0.8) 		5.9
(-1.9) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188782_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3453
Sequence Type Exemplar sequence
Representative Public ID T21B4.8 NCBI
Target Description T21B4.8 /REP_DB=WormBase Gene ID /WP=CE16433 /TR=O18103 /GB=CAB03375.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064271(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064271 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-61) (srh-61) mRNA, complete cds. 11/11 None
GENEFINDER00000006704 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12514888:12517350:-1 11/11 None
T21B4.8 ENSEMBL cdna:known chromosome:CEL140:II:12514888:12516316:-1 gene:T21B4.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12514884-12516313(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol srh-61
Ensembl T21B4.8
Entrez Gene 188677 Entrez gene
SwissProt O18103 EMBL-EBI
WormBase CE16433 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4553 hydrolase activity, hydrolyzing O-glycosyl compounds inferred from electronic annotation QuickGO AmiGO
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03375 Hypothetical protein T21B4.8 [Caenorhabditis elegans] ref|NP_496672.1| Serpentine Receptor, class H family member (srh-61) [Caenorhabditis elegans] 0.0
blast CAB03375 Hypothetical protein T21B4.8 [Caenorhabditis elegans] ref|NP_496672.1| Serpentine Receptor, class H family member (srh-61) [Caenorhabditis elegans] 1.0E-107
blast CAB03376 Hypothetical protein T21B4.9 [Caenorhabditis elegans] ref|NP_496673.1| Serpentine Receptor, class H family member (srh-70) [Caenorhabditis elegans] 2.0E-86
blast CAD56599 Hypothetical protein T21B4.14 [Caenorhabditis elegans] ref|NP_496670.2| Serpentine Receptor, class H family member (srh-73) [Caenorhabditis elegans] 1.0E-70
blast T25056 hypothetical protein T21B4.10 - Caenorhabditis elegans 1.0E-70
blast AAG45575 Serpentine receptor, class h protein 62 [Caenorhabditis elegans] ref|NP_503190.1| Serpentine Receptor, class H family member (srh-62) [Caenorhabditis elegans] 1.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.2E-72
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.9E-62
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.2E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496672.1 7 25-47,60-82,102-124,145-164,209-231,251-273,288-310
T21B4.8 7 25-47,60-82,102-124,145-164,209-231,251-273,288-310
GENEFINDER00000006704 6 29-51,95-117,134-156,258-280,300-322,337-359
Sequence
Target Sequence 
>C. ELEGANS:188782_AT
aattgacaaagttccctctagagttgtatttatttgtgtaaatgtaattggtattttgag
ttttccaacgtttcaattattcaatcttcaggatcagtttgaggtgaaaattgaggtttt
gaagacccttccctgtccagccgaagacttcttcgaaccatcaacattaatattagcatt
tgacggtttttcggaaacctacattattttttcttacgttttcatgttctctatcgccat
atttgagatgacatttttctccgcatgttgtatatactacttggtcttttctacaaccac
acaaatttcttcaacgacacgaaaattccagcttcgttcattctgggcaatcacaataca
aacccttattccgctattatttgtgattataccaattaccgcaacgatgacaaaagagaa
acaagggtacagtcaggtgcaaaataatcagatggtgatacttttcctgatgcataacgg
agttgctagtttgtcaattctacttgcacatgctccatatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGACAAAGTTCCCTCTAGAGTT 501 177 423 Antisense
TTGAGGTTTTGAAGACCCTTCCCTG 374 703 533 Antisense
GAAGACTTCTTCGAACCATCAACAT 633 339 565 Antisense
TACGTTTTCATGTTCTCTATCGCCA 419 647 637 Antisense
TACTTGGTCTTTTCTACAACCACAC 449 643 700 Antisense
ACAACCACACAAATTTCTTCAACGA 33 113 715 Antisense
GAAAATTCCAGCTTCGTTCATTCTG 537 353 743 Antisense
TACAAACCCTTATTCCGCTATTATT 456 641 779 Antisense
AGATGGTGATACTTTTCCTGATGCA 544 67 872 Antisense
GCTAGTTTGTCAATTCTACTTGCAC 566 303 907 Antisense
TCTACTTGCACATGCTCCATATCGA 692 613 921 Antisense
Sequence Source Affymetrix Proprietary Database