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[188781_at]

Description K03C7.2 /REP_DB=WormBase Gene ID /WP=CE04716 /TR=Q21187 /GB=AAA81139.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=DNA-binding
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 04      4grp_high_8_8 > 42      6grp_highest_nonorm > 70      6grp_total > 24      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 434
1 2 3 4 range
A 616
(3)
P 		418
(-0.1)
P 		304
(-1.8)
P 		228.6
(-3)
A 		387
B 544.9
(3)
P 		356.4
(-0.5)
P 		287.8
(-1.7)
P 		217.8
(-3)
P 		327
C 621.4
(3)
P 		447.5
(0.6)
P 		333.4
(-1)
P 		187.6
(-3)
P 		434
avr 594.1
(3) 		407.3
(0.1) 		308.4
(-1.5) 		211.3
(-3) 		383

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 496
1 2 3 4 5 6 range
A 413
(1.4)
P 		483.3
(3)
P 		271.7
(-2)
P 		247.1
(-2.5)
P 		269.7
(-2)
P 		227.3
(-3)
P 		256
B 343
(0.7)
P 		459.9
(3)
P 		415.5
(2.1)
P 		257
(-1)
P 		228.8
(-1.6)
P 		158.1
(-3)
P 		302
C 643.9
(3)
P 		348.4
(-0.6)
P 		417.1
(0.3)
P 		269
(-1.5)
P 		277.9
(-1.4)
P 		148.3
(-3)
P 		496
avr 466.6
(3) 		430.5
(2.2) 		368.1
(1) 		257.7
(-1.3) 		258.8
(-1.3) 		177.9
(-3) 		289
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 224.3
(3)
P 		90.7
(-1.2)
P 		79.5
(-1.6)
P 		33.5
(-3)
A 		191
B 173.8
(3)
P 		88
(-1)
P 		66.7
(-2)
P 		46.4
(-3)
P 		127
C 205.7
(3)
P 		128.7
(0.3)
P 		116.2
(-0.1)
P 		31.6
(-3)
P 		174
avr 201.3
(3) 		102.5
(-0.6) 		87.5
(-1.2) 		37.2
(-3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 76.1
(-1.9)
P 		171.9
(3)
P 		59.2
(-2.8)
P 		62.7
(-2.6)
P 		81.4
(-1.7)
P 		55.3
(-3)
P 		117
B 119.3
(0.8)
P 		153.1
(3)
P 		100.9
(-0.3)
P 		68.1
(-2.4)
P 		93
(-0.8)
P 		59
(-3)
P 		94
C 238.7
(3)
P 		106.3
(-1.2)
P 		106.2
(-1.2)
P 		54.1
(-2.9)
P 		89.9
(-1.7)
P 		49.6
(-3)
P 		189
avr 144.7
(3) 		143.8
(2.9) 		88.8
(-0.7) 		61.6
(-2.5) 		88.1
(-0.8) 		54.6
(-3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188781_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18084
Sequence Type Exemplar sequence
Representative Public ID K03C7.2 NCBI
Target Description K03C7.2 /REP_DB=WormBase Gene ID /WP=CE04716 /TR=Q21187 /GB=AAA81139.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=DNA-binding
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029589(11), NM_001029590(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029589 NCBI Caenorhabditis elegans K03C7.2a (DNA-binding) mRNA, complete cds. 11/11 None
NM_001029590 NCBI Caenorhabditis elegans K03C7.2b (DNA-binding) mRNA, complete cds. 11/11 None
GENEFINDER00000013647 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3817931:3822062:-1 11/11 None
K03C7.2a ENSEMBL cdna:known chromosome:CEL140:X:3816840:3826943:-1 gene:K03C7.2 11/11 A 
K03C7.2b ENSEMBL cdna:known chromosome:CEL140:X:3817931:3820550:-1 gene:K03C7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013644 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3818119-3821206(-) 100.0 100.0
Public Domain and Genome References
Ensembl K03C7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81139 Forkhead transcription factor family protein 9, isoform a [Caenorhabditis elegans] ref|NP_001024760.1| K03C7.2a [Caenorhabditis elegans] 1.0E-128
blast AAP68936 Forkhead transcription factor family protein 9, isoform b [Caenorhabditis elegans] ref|NP_001024761.1| K03C7.2b [Caenorhabditis elegans] 1.0E-116
blast AAA81139 Forkhead transcription factor family protein 9, isoform a [Caenorhabditis elegans] ref|NP_001024760.1| K03C7.2a [Caenorhabditis elegans] 1.0E-116
Protein Domains
Database ID Description E-Value
scop a.4.5.Forkhead DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Forkhead DNA-binding domain 6.00000001902646E-29
scop a.4.5.Forkhead DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Forkhead DNA-binding domain 2.00000000634215E-28
scop a.4.5.Forkhead DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Forkhead DNA-binding domain 4.00000001268431E-28
Pfam IPR001766 EMBL-EBI Fork head transcription factor 1.2E-25
Pfam IPR001766 EMBL-EBI Fork head transcription factor 1.2E-25
Pfam IPR001766 EMBL-EBI Fork head transcription factor 1.2E-25
Sequence
Target Sequence 
>C. ELEGANS:188781_AT
gcagcctcatcggacaactttgaaagaccgtcactatcgtacaaagacctcatcattgaa
gcaatcgacagaagtcctgaaaaacgattgaagctcaatgaaatctaccaggtaatccga
ttgctgcacccatactacagacatcgaccagatcaatggggatggcaaaactcgatccga
cacaatttgagtcttcacgattgctttgtcaagttgcctctcaaacagacttctgccagc
ggagttgtcggacacttctggaccgttgttcctgagctcagtgacaaacaaacactcaga
aggcggaatcgtcaacaaccaagagcacttgcaaagaagagcgatgctggaagaacatta
tcaagagatgacagaggcagctctggaagcggagaaacatcgccgagcccgtcgcagcct
tcaatcagtccaccaaatgagaacccgatgccatcagttcaggctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCCTCATCGGACAACTTTGAAA 701 313 220 Antisense
AAAGACCGTCACTATCGTACAAAGA 387 119 242 Antisense
ATTGCTGCACCCATACTACAGACAT 603 5 339 Antisense
CGATTGCTTTGTCAAGTTGCCTCTC 130 249 417 Antisense
TTGCCTCTCAAACAGACTTCTGCCA 68 703 433 Antisense
TTCTGCCAGCGGAGTTGTCGGACAC 72 693 450 Antisense
AGTTGTCGGACACTTCTGGACCGTT 426 65 462 Antisense
ACCGTTGTTCCTGAGCTCAGTGACA 239 89 481 Antisense
GGCGGAATCGTCAACAACCAAGAGC 232 541 521 Antisense
GAAGCGGAGAAACATCGCCGAGCCC 175 343 605 Antisense
AACCCGATGCCATCAGTTCAGGCTT 682 145 661 Antisense
Sequence Source Affymetrix Proprietary Database